| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,744,881 – 17,744,987 |
| Length | 106 |
| Max. P | 0.535273 |
| Location | 17,744,881 – 17,744,987 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 69.41 |
| Shannon entropy | 0.56035 |
| G+C content | 0.49527 |
| Mean single sequence MFE | -19.85 |
| Consensus MFE | -12.28 |
| Energy contribution | -11.98 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.53 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.535273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17744881 106 + 21146708 UACCAUAACCCUGCCCCCUACCUCAUGCCAAACUGAUACCUUUCAU-CUACUGUGGGGCUUUUUCCUUCUUUCUUUCUCCUUUGAAGGUUACCUGUGGCCAGGUGUC .......((((((((.....((((((.......(((......))).-.....))))))......(((((..............)))))........)).)))).)). ( -19.56, z-score = 0.16, R) >droSim1.chr2R 16379306 101 + 19596830 -UACCAUACCCUACCCCCUACCUCAUGCCAAACUGAUACCUUUUAU-CUACUGUGGGGCUCUUUCUU----UCUUUCUCCUUUGAAGGUUACCUGUGGCCAGGUGUC -....(((((.................(((....((((.....)))-).....)))((((.......----.(((((......)))))........)))).))))). ( -18.79, z-score = 0.13, R) >droSec1.super_9 1060100 101 + 3197100 -UACCAUACCCUACCCCCUACCUCAUGCCAAACUGAUACCUUUCAU-CUACUGUGGGGCUCUUUCUU----UCUUUCUCCUUUGAAGGUUACCUGUGGCCAGGUGUC -.................................(((((((.((((-.....))))((((.......----.(((((......)))))........))))))))))) ( -17.69, z-score = 0.62, R) >droYak2.chr2R 9697441 82 - 21139217 -------UUUCCAUACCCUUACCCAUACCAAACUGAUACCUUUCAU-CUACUGU-----------------UCAUUCUCCUUUGAAGGUUACCUGUGGCCAGGUGUC -------...........................(((((((.....-......(-----------------(((........))))(((((....)))))))))))) ( -14.20, z-score = -0.85, R) >droEre2.scaffold_4845 11878181 94 + 22589142 --------UCCCAUACCCUGCCCCAUACCAAACUGAUACCUUUCAU-CUGCUGUGGGGCUCUGUCCU----UCUUUCUCCUUUGAUGGUUACCUGUGGCCAGGUGUC --------....(((((..((((((((.((...(((......))).-.)).))))))))........----..............((((((....))))))))))). ( -26.60, z-score = -2.24, R) >droAna3.scaffold_13266 11126989 86 + 19884421 --------CCCCAAACGCCUUCCCACUCC---CCGAUGCUCUUUAUAUUUCUGUUGAAUUU----------GCUUCUGGCCCGGUCGGCUGGCUCCAGCCAGGUGUC --------......((((((.........---(((..(((........(((....)))...----------......))).)))..(((((....))))))))))). ( -22.23, z-score = -0.99, R) >consensus _______ACCCCACACCCUACCCCAUGCCAAACUGAUACCUUUCAU_CUACUGUGGGGCUCUUUC_U____UCUUUCUCCUUUGAAGGUUACCUGUGGCCAGGUGUC ..................................(((((((.................................(((......)))(((((....)))))))))))) (-12.28 = -11.98 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:47 2011