| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,741,650 – 17,741,700 |
| Length | 50 |
| Max. P | 0.625424 |
| Location | 17,741,650 – 17,741,700 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.44000 |
| Mean single sequence MFE | -10.80 |
| Consensus MFE | -10.80 |
| Energy contribution | -10.80 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.99 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.625424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17741650 50 - 21146708 UCUAACUGUCGUCUGGCUGCACUUUCGGCAAAGAUAGAUAGCUUCUUUUG .....(((((((((.((((......))))..)))).)))))......... ( -10.80, z-score = -0.99, R) >droSim1.chr2R 16376105 50 - 19596830 UCUAACUGUCGUCUGGCUGCACUUUCGGCAAAGAUAGAUAGCUUCUUUUG .....(((((((((.((((......))))..)))).)))))......... ( -10.80, z-score = -0.99, R) >droSec1.super_9 1056772 50 - 3197100 UCUAACUGUCGUCUGGCUGCACUUUCGGCAAAGAUAGAUAGCUUCUUUUG .....(((((((((.((((......))))..)))).)))))......... ( -10.80, z-score = -0.99, R) >consensus UCUAACUGUCGUCUGGCUGCACUUUCGGCAAAGAUAGAUAGCUUCUUUUG .....(((((((((.((((......))))..)))).)))))......... (-10.80 = -10.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:46 2011