| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,688,901 – 17,688,959 |
| Length | 58 |
| Max. P | 0.830807 |
| Location | 17,688,901 – 17,688,959 |
|---|---|
| Length | 58 |
| Sequences | 8 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 83.66 |
| Shannon entropy | 0.32438 |
| G+C content | 0.36602 |
| Mean single sequence MFE | -10.70 |
| Consensus MFE | -9.98 |
| Energy contribution | -9.88 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.830807 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17688901 58 - 21146708 -AAGUUUGAAGCGAGAAA-AAAACUUUCGCUACUUCAGUGGCGCAAAUUACAACAAAAGC-- -.((((((......((((-.....))))(((((....))))).))))))...........-- ( -10.90, z-score = -0.66, R) >droSim1.chr2R 16330877 58 - 19596830 -AAGUUUGAAGCGAGAAA-AAAACUUUCGCUACUUCAGUGGCGCAAAUUACAACAAAAGC-- -.((((((......((((-.....))))(((((....))))).))))))...........-- ( -10.90, z-score = -0.66, R) >droSec1.super_9 1012151 58 - 3197100 -AAGUUUGAAGCGAGAAA-AAAACUUUCGCUACUUCAGUGGCGCAAAUUACAACAAAAGC-- -.((((((......((((-.....))))(((((....))))).))))))...........-- ( -10.90, z-score = -0.66, R) >droYak2.chr2R 9647902 60 + 21139217 -AAGUUUGAUGCGAGAAA-AAAACUUUCGCUACUUCAGUGGCGCAAAUUACAACAAAAAGGC -..((....(((..((((-.....))))(((((....))))))))....))........... ( -11.80, z-score = -0.91, R) >droEre2.scaffold_4845 11827966 59 - 22589142 -AAGUUUGAAGCGAGAAA-AAAACUUUCGCUACUUCAGUGGCGCAAAUUACAACAAAAGGC- -.((((((......((((-.....))))(((((....))))).))))))............- ( -10.90, z-score = -0.54, R) >droAna3.scaffold_13266 11072691 53 - 19884421 AAAUUUUAAAGUAGGAAA-AAAACUUUCGCUACUUCAGUGGCGCAAAAAAGAGC-------- ..................-....((((((((((....))))))....))))...-------- ( -8.60, z-score = -0.58, R) >dp4.chr3 15247553 62 - 19779522 AAAUUUUGAAGCGGGAAAUAAAACUUUCGCUACUUCAGUGGCGCAAAAAAUAAAACACAAUC ..(((((...((..((((......))))(((((....)))))))..)))))........... ( -10.80, z-score = -2.05, R) >droPer1.super_4 3358613 62 + 7162766 AAAUUUUGAAGCGGGAAAUAAAACUUUCGCUACUUCAGUGGCGCAAAAAAUAAAACACAAUC ..(((((...((..((((......))))(((((....)))))))..)))))........... ( -10.80, z-score = -2.05, R) >consensus _AAGUUUGAAGCGAGAAA_AAAACUUUCGCUACUUCAGUGGCGCAAAUUACAACAAAAGC__ ..........((..((((......))))(((((....))))))).................. ( -9.98 = -9.88 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:41 2011