| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,685,039 – 17,685,135 |
| Length | 96 |
| Max. P | 0.571931 |
| Location | 17,685,039 – 17,685,135 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 88.76 |
| Shannon entropy | 0.18582 |
| G+C content | 0.52327 |
| Mean single sequence MFE | -31.56 |
| Consensus MFE | -21.96 |
| Energy contribution | -21.84 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.571931 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17685039 96 - 21146708 GUGGCUUGUGGGCCGCUGUGCGUGCCGAUCCCAUUGGGAUUGGACCAUAGGACCCA------------AGCCCAGCCCAGACUAAAGUCAGAACAUUGAUAAAUAACU (.((((((.((..(.(((((.((.((((((((...)))))))))))))))).))))------------)))))......(((....)))................... ( -34.60, z-score = -2.50, R) >droSim1.chr2R 16326990 94 - 19596830 GGGGCUUGUGGUCCGUUGUGCGUGCCGAUCCCAUUGGGAUUGGACCAUAG--CCCA------------AGCCCAGCCCAGACUAAAGUCAGAACAUUGAUAAAUAACU .(((((((.(((....((((.((.((((((((...)))))))))))))))--))))------------)))))......(((....)))................... ( -35.30, z-score = -3.00, R) >droSec1.super_9 1008256 94 - 3197100 GGGCCUUGUGGUCCGCUGUGCGUGGCGAUCCCAUUGGGAUUGGACCAUAG--CCCA------------AGCCCAGCCCAGACUAAAGUCAGAACAUUGAUAAAUAACU ((((..(((((((((((......)))((((((...)))))))))))))))--))).------------...........(((....)))................... ( -32.80, z-score = -2.05, R) >droYak2.chr2R 9643848 104 + 21139217 --GGCUUGUGGUCCGCUGUGCCUGCCGAUCCCAUUGGGAUUGGACCAUAA--CCCAAACCCAAACCGAAACCCAGCCCAGACUAAAGUCAGAACAUUGAUAAAUAACU --((.(((((((((((.......)).((((((...)))))))))))))))--.))........................(((....)))................... ( -27.00, z-score = -2.13, R) >droEre2.scaffold_4845 11824012 94 - 22589142 GUGGCUUGUGGUCCGCUGUGCGUGCCGAUCCCAUUGGGAUUGGGCCAUAA--CCCG------------AACCCGGCCCAGACUAAAGUCAGAACAUUGAUAAAUAACU .((((((.(((((...((((.((.((((((((...)))))))))))))).--.(((------------....)))....))))))))))).................. ( -28.10, z-score = -0.74, R) >consensus GGGGCUUGUGGUCCGCUGUGCGUGCCGAUCCCAUUGGGAUUGGACCAUAG__CCCA____________AGCCCAGCCCAGACUAAAGUCAGAACAUUGAUAAAUAACU ..((.(((((((((((...)).....((((((...)))))))))))))))...))........................(((....)))................... (-21.96 = -21.84 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:40 2011