| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,683,146 – 17,683,236 |
| Length | 90 |
| Max. P | 0.616716 |
| Location | 17,683,146 – 17,683,236 |
|---|---|
| Length | 90 |
| Sequences | 11 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 59.63 |
| Shannon entropy | 0.75371 |
| G+C content | 0.50638 |
| Mean single sequence MFE | -25.97 |
| Consensus MFE | -7.13 |
| Energy contribution | -7.40 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.27 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.616716 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17683146 90 - 21146708 ---UGUCUGGGCAGACAGACAGCAGCAAAAAGCGAAAUAAGCGACAUUUUGUCGCAAAUCCUUGGC----AAAAAAAGACACCGCCUUGGGGUGAAC---------- ---((((((......))))))((.((.....)).......(((((.....))))).........))----.........((((.(....)))))...---------- ( -26.30, z-score = -1.89, R) >droSim1.chr2R 16325107 88 - 19596830 ---UGUCUGGGCAGACAGACAGCAG-AAAAAGCGAAAUAAGCGAAGUUUUGUAGCAAAUCCUUGGC-----AAAAAAGACAGCGCCUUGGGCUGAAA---------- ---((((((......))))))((((-((...((.......))....))))))(((....((..(((-----............)))..)))))....---------- ( -22.10, z-score = -0.42, R) >droSec1.super_9 1006396 87 - 3197100 ---UGUCUGGGCAGACAGACAGCAG-AAAAAGCGAAAUAAGCGAAGUUUUGUCGCAAAUCCUUGGC------AAAAAGACAGCGCCUUGGGCUAAAA---------- ---.(((((......)))))(((..-.....((((...((((...))))..))))....((..(((------...........)))..)))))....---------- ( -23.80, z-score = -0.93, R) >droYak2.chr2R 9641704 79 + 21139217 ---UGUCUGGGUAGACAGACAGCGG-AAUGAGCGAAA------AGUUUUUGUCGCAAAUCCUUGGC--------AAAGACAGCGCCUUGGGGUGAAC---------- ---((((((......))))))((((-...((((....------.))))...))))..(((((.(((--------.........)))..)))))....---------- ( -25.40, z-score = -1.86, R) >droEre2.scaffold_4845 11822037 77 - 22589142 ---UGUCUGGCUACACAGACAGCGG-AAUAAGCGAAA------AG-UUUUGUCGCAAAUCCUUGGC--------AAAGACAGCGCCUU-GGGUGAAC---------- ---((((((......))))))((((-...((((....------.)-)))..))))..((((..(((--------.........)))..-))))....---------- ( -25.00, z-score = -2.08, R) >dp4.chr3 15241760 97 - 19779522 ---UGUCUGGAAAGACAGACAGCAG-CAUAAGCGAAA------ACUUUUUGUCGCAAAUCCCCAGAGCUGGCACACAGAGCUGGCCGUCUCUGUCCCCGGGGCAUGC ---((((((......))))))((((-(....((((..------........))))....((((((((.((((.((......)))))).))))).....))))).))) ( -32.70, z-score = -1.10, R) >droPer1.super_4 3352824 89 + 7162766 ---UGUCUGGAAAGACAGACAGCAG-CAUAAGCGAAA------ACUUUUUGUCGCAAAUCCCC--------CACAGAGAGCUGGCCGUCUCUGUCCCCGGGGCAUGC ---((((((......))))))...(-(((..((((..------........)))).....(((--------((((((((........)))))))....)))).)))) ( -29.20, z-score = -1.49, R) >droVir3.scaffold_12875 10239482 77 - 20611582 UUUCGUCUGG--AGACAGACGACAA-AAUAAGCG-GA------AAGUUUUGUCGCAAAUCCCCGG---------CACGGCCCAGCCGCAGGCAUUC----------- ..(((((((.--...)))))))...-.....(((-(.------..((..(((((........)))---------))..))....))))........----------- ( -28.40, z-score = -3.15, R) >droGri2.scaffold_15245 3391414 77 - 18325388 -UGCGUCUGG--AGACAGACGAAAA-AAUAAGCGCAA------AAGUUUUGUGGCAAAUCCCUGG---------CACGGCCCAGCCGCAGGCAUUC----------- -((((((((.--...))))).....-......(((((------.....))))))))(((.((((.---------..((((...)))))))).))).----------- ( -25.10, z-score = -1.52, R) >droMoj3.scaffold_6496 10101671 77 + 26866924 UCCCGUCUGG--AGACAGACAGCAA-AAUAAGCG-GA------AAGUUUUGUCGCAAAUCCCCGG---------CGUGGCCCAGCCGCAGGCAAUC----------- ..(((((((.--...))))).....-.....(((-(.------..((..(((((........)))---------))..))....)))).)).....----------- ( -26.00, z-score = -2.03, R) >anoGam1.chr3R 5698682 83 + 53272125 ---UGGCUGAUUAAGUGUACCGAA--CUUGGUGGAACUUCAUAGCUUUUUAAUGCAUGACAUCGGU--------ACAAGGUGGGUCUUGUCAAAGU----------- ---((((.((((...((((((((.--((....))....((((.((........))))))..)))))--------))).....))))..))))....----------- ( -21.70, z-score = -1.19, R) >consensus ___UGUCUGGG_AGACAGACAGCAG_AAUAAGCGAAA______AAGUUUUGUCGCAAAUCCUUGGC________AAAGACAGCGCCUUGGGCUGAAC__________ ...((((((......))))))..........(((..................))).................................................... ( -7.13 = -7.40 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:39 2011