| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,681,396 – 17,681,496 |
| Length | 100 |
| Max. P | 0.590016 |
| Location | 17,681,396 – 17,681,496 |
|---|---|
| Length | 100 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 76.22 |
| Shannon entropy | 0.42011 |
| G+C content | 0.52316 |
| Mean single sequence MFE | -32.57 |
| Consensus MFE | -18.57 |
| Energy contribution | -21.23 |
| Covariance contribution | 2.66 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.590016 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17681396 100 + 21146708 GAGAUGAUUAGGUUCGCGCUGGUCGCGGUUGCUG---UUGCUGCAGUUGCUGCCUU-CGGGGGACUCAUUAAAA-CGGAGUUCCUAAACCGGACUUAGGAAAUUG------- ..(((..(((((((((..((((..(((((.((((---(....))))).)))))..)-)))(((((((.......-..))))))).....)))))))))...))).------- ( -36.00, z-score = -2.11, R) >droPer1.super_4 3350723 83 - 7162766 GAGAUGAUUAGGUUCACGUU--UCGCAGUU-------------------CUGCCUUGUGGCUGCCUCAUUAAAA-CGACGAUGGGACACUGGACGUGGAAAAUGG------- ............((((((((--...((((.-------------------..(((....)))...((((((....-....))))))..))))))))))))......------- ( -20.00, z-score = 0.11, R) >droAna3.scaffold_13266 11065044 90 + 19884421 GAGAUGAUUAGGUUCGCGUUUGCUGCACUU---------------------GCCUUGUGGC-GUCUCAUUAAAAGCCAAGUUCCGACACCGGACUCGGAGUCGGGCAAAUUG ((((((...((((..(.((.....)).)..---------------------)))).....)-)))))............((.(((((.(((....))).)))))))...... ( -27.30, z-score = -0.64, R) >droEre2.scaffold_4845 11820317 94 + 22589142 GAGAUGAUUAGGUUCGCGCUGGCCGCGGUUG---------CUGCAGUUGCUGCCUU-CGGGGGACUCAUUAAAA-CGGAGUUCCUAAACCGGACUUAGGAAAUUG------- ..(((..(((((((((((..(((.((..(((---------...)))..)).)))..-))((((((((.......-..))))))))....)))))))))...))).------- ( -31.90, z-score = -1.26, R) >droYak2.chr2R 9639917 103 - 21139217 GAGAUGAUUAGGUUCGCGCUGGCCGCGGUUGCUGCAGUUGCUGAAGCUGCUGCCUU-CGGGGGACUCAUUAAAA-CGGAGUUCCUAUACCGGACUUAGGAAAUUG------- ..(((..(((((((((((..(((.((((((...((....))...)))))).)))..-))((((((((.......-..))))))))....)))))))))...))).------- ( -38.60, z-score = -2.20, R) >droSec1.super_9 1004728 100 + 3197100 GAGAUGAUUAGGUUCGCGCUGGCCGCGGUUGCUG---UUGCUGCAGUUGCUGCCUU-CGGGGGACUCAUUAAAA-CGGAGUUCCUAAACCGGACUUAGGAAAUUG------- ..(((..(((((((((((..(((.((..((((..---.....))))..)).)))..-))((((((((.......-..))))))))....)))))))))...))).------- ( -37.10, z-score = -2.15, R) >droSim1.chr2R 16323447 100 + 19596830 GAGAUGAUUAGGUUCGCGCUGGCCGCGGUUGCUG---UUGCUGCAGUUGCUGCCUU-CGGGGGACUCAUUAAAA-CGGAGUUCCUAAACCGGACUUAGGAAAUUG------- ..(((..(((((((((((..(((.((..((((..---.....))))..)).)))..-))((((((((.......-..))))))))....)))))))))...))).------- ( -37.10, z-score = -2.15, R) >consensus GAGAUGAUUAGGUUCGCGCUGGCCGCGGUUGCUG___UUGCUGCAGUUGCUGCCUU_CGGGGGACUCAUUAAAA_CGGAGUUCCUAAACCGGACUUAGGAAAUUG_______ .......(((((((((((..(((.((((((((..........)))))))).)))...))((((((((..........))))))))....))))))))).............. (-18.57 = -21.23 + 2.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:39 2011