| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,598,406 – 3,598,501 |
| Length | 95 |
| Max. P | 0.879985 |
| Location | 3,598,406 – 3,598,501 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 87.49 |
| Shannon entropy | 0.24041 |
| G+C content | 0.59569 |
| Mean single sequence MFE | -38.70 |
| Consensus MFE | -22.59 |
| Energy contribution | -22.34 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.76 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.879985 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3598406 95 + 23011544 CGACACUGUC---GAUGGCUCGAUGGGAUGGAUGACGAGGCAUCGAU-GAGGCCUGAUG-GCUUUGACUUUGAUGCCCAGGGACACCCCGGCGAG--CCAGG ((((...)))---).(((((((.((((.((.....(..((((((((.-((((((....)-)))))....))))))))..)...)).)))).))))--))).. ( -43.40, z-score = -4.08, R) >droSim1.chr2L 3556977 95 + 22036055 CGACACUGUC---GAUGGCUCGAUGGGAUGGAUGACGAGGCAUCGAU-GAGGUCUGAUG-GCUUUGACUUUGAUGCCCAGGGACACCCCGGUGAG--CCAGG ((((...)))---).(((((((.((((.((.....(..((((((((.-((((((....)-)))))....))))))))..)...)).)))).))))--))).. ( -39.10, z-score = -2.73, R) >droSec1.super_5 1699201 95 + 5866729 CGACACUGUC---GAUGGCUCGAUGGGAUGGAUGACGAGGCAUCGAU-GAGGUCUGAUG-GCUUUGACUUUGAUGCCCAGGGACACCCCGGUGAG--CCAGG ((((...)))---).(((((((.((((.((.....(..((((((((.-((((((....)-)))))....))))))))..)...)).)))).))))--))).. ( -39.10, z-score = -2.73, R) >droYak2.chr2L 3590790 95 + 22324452 CGACACUGUC---GAUGGCUCGAUGGGAUGGAUGACGAGGCAUCGAU-GAGGCCUGAUG-GCUUUGACUUUGAUGCCCAGGGACACCCCGGUGAG--CCGGG ((((...)))---).(((((((.((((.((.....(..((((((((.-((((((....)-)))))....))))))))..)...)).)))).))))--))).. ( -41.10, z-score = -3.25, R) >droEre2.scaffold_4929 3637121 95 + 26641161 CGACACUGUC---GAUGGCUCGAUGGGAUGGAUGACGAGGCAUCGAU-GAGGCCUGAUG-GCUUUGACUUUGAUGCCCAGGGACACCCCGGUGAG--CCAGG ((((...)))---).(((((((.((((.((.....(..((((((((.-((((((....)-)))))....))))))))..)...)).)))).))))--))).. ( -41.80, z-score = -3.64, R) >droAna3.scaffold_12916 5649363 97 + 16180835 CGACACUGUCUCAAAUGGAUGUCUCAAAUGGAUGACGAGGCAUCGAU-GAGGCCUGAUG-GCUUUGACUUUGAUGCCCAGGGACACCCCGGUGAG--CCGG- .....(((.((((...((.((((((....(.....)(.((((((((.-((((((....)-)))))....))))))))).)))))).))...))))--.)))- ( -36.50, z-score = -2.32, R) >dp4.chr4_group3 6547292 91 - 11692001 CAAGACUGUC---GAUGG--------GAUGGAUGACGAGGCAUCGAUCGGGGCCUGAUGAGGUCUGACGUUGAUGCCGAGGGACACCCCGGUGAGAGCCAGA .....(((((---.....--------))))).......(((((((((..((((((....))))))...)))))))))..(((....)))(((....)))... ( -34.30, z-score = -1.64, R) >droPer1.super_1 3647066 91 - 10282868 CAAGACUGUC---GAUGG--------GAUGGAUGACGAGGCAUCGAUCGGGGCCUGAUGAGGUCUGACGUUGAUGCCGAGGGACACCCCGGUGAGAGCCAGA .....(((((---.....--------))))).......(((((((((..((((((....))))))...)))))))))..(((....)))(((....)))... ( -34.30, z-score = -1.64, R) >consensus CGACACUGUC___GAUGGCUCGAUGGGAUGGAUGACGAGGCAUCGAU_GAGGCCUGAUG_GCUUUGACUUUGAUGCCCAGGGACACCCCGGUGAG__CCAGG .....(((((...)))))..........(((.(.((..((((((((..((((((....).)))))....))))))))..(((....))).)).)...))).. (-22.59 = -22.34 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:10 2011