| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,675,755 – 17,675,855 |
| Length | 100 |
| Max. P | 0.716919 |
| Location | 17,675,755 – 17,675,855 |
|---|---|
| Length | 100 |
| Sequences | 11 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 88.08 |
| Shannon entropy | 0.23633 |
| G+C content | 0.38030 |
| Mean single sequence MFE | -20.85 |
| Consensus MFE | -12.88 |
| Energy contribution | -13.01 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.716919 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17675755 100 - 21146708 ------UUAGUCCCAGGCAUUAAGCAAUCAAACGUUUGAUUUUCAUUUAUCGUGUAAUCAAGCGUAAAAAUAGCUUCGUGACCAAAGUGACUCAUCAUCAUCAUGC------ ------..(((((..(((((.((((......((((((((((..(((.....))).)))))))))).......)))).))).))...).))))..............------ ( -21.92, z-score = -3.00, R) >droEre2.scaffold_4845 11814779 103 - 22589142 ------UUAGUCCCAGGCAUUAAGCAAUCAAACGUUUGAUUUUCAUUUAUCGUGUAAUCAAGCGUAAAAAUAGCUUCGUGACCAAAGUGACUCAUCAUCAUCCUGAUCC--- ------..(((((..(((((.((((......((((((((((..(((.....))).)))))))))).......)))).))).))...).)))).((((......))))..--- ( -22.32, z-score = -3.19, R) >droYak2.chr2R 9634179 100 + 21139217 ------UUAGUCCCAGGCAUUAAGCAAUCAAACGUUUGAUUUUCAUUUAUCGUGUAAUCAAGCGUAAAAAUAGCUUCGUGACCAAAGUGACUCAUCAUCAUCAUCC------ ------..(((((..(((((.((((......((((((((((..(((.....))).)))))))))).......)))).))).))...).))))..............------ ( -21.92, z-score = -3.97, R) >droSec1.super_9 999170 100 - 3197100 ------UUAGUCCCAGGCAUUAAGCAAUCAAACGUUUGAUUUUCAUUUAUCGUGUAAUCAAGCGUAAAAAUAGCUUCGUGACCAAAGUGACUCAUCAUCAUCAUGC------ ------..(((((..(((((.((((......((((((((((..(((.....))).)))))))))).......)))).))).))...).))))..............------ ( -21.92, z-score = -3.00, R) >droSim1.chr2R 16317864 100 - 19596830 ------UUAGUCCCAGGUAUUAAGCAAUCAAACGUUUGAUUUUCAUUUAUCGUGUAAUCAAGCGUAAAAAUAGCUUCGUGACCAAAGUGACUCAUCAUCAUCAUGC------ ------..(((((..(((((.((((......((((((((((..(((.....))).)))))))))).......)))).)).)))...).))))..............------ ( -19.92, z-score = -2.50, R) >droAna3.scaffold_13266 11059629 100 - 19884421 ------UUAGUCCCUGGCAUUAAGCAAUCAAACGUUUGAUUUUCAUUUAUCGUGUAAUCAAGCGUAAAAAUAGCUUCGUGACCAAAGUGACUCAUCAUCAUCAUCC------ ------..(((((.((((((.((((......((((((((((..(((.....))).)))))))))).......)))).))).)))..).))))..............------ ( -23.22, z-score = -4.02, R) >droPer1.super_4 3345133 106 + 7162766 ------UAAGUCCAUGGCAUUAAGCAAUCAAACGUUUGAUUUUCAUUUAUCGUGUAAUCAAGCGGAAAAAUAGCUUCGUGACCAAAGUGACUCAUCAUCAUCAUCCAUCGUC ------..(((((.((((((.((((.......(((((((((..(((.....))).)))))))))........)))).))).)))..).)))).................... ( -22.66, z-score = -2.60, R) >dp4.chr3 15233207 106 - 19779522 ------UAAGUCCAUGGCAUUAAGCAAUCAAACGUUUGAUUUUCAUUUAUCGUGUAAUCAAGCGGAAAAAUAGCUUCGUGACCAAAGUGACUCAUCAUCAUCAUCCAUCGUC ------..(((((.((((((.((((.......(((((((((..(((.....))).)))))))))........)))).))).)))..).)))).................... ( -22.66, z-score = -2.60, R) >droVir3.scaffold_12875 10379756 102 + 20611582 ----CACGCUGGCCAGGCAUUAAGCAAUCAAACAUUUGAUUUUCAUUUAUCGCGUAAUCAAGCGUAAAAAUAGCUUCGUGACCAAAGUAACUCAUCAUCGUUGCCC------ ----...........(((((.((((((((((....))))))....((((.(((........)))))))....)))).))).))...(((((........)))))..------ ( -20.20, z-score = -1.30, R) >droMoj3.scaffold_6496 16774605 110 - 26866924 GACCUACGCUGGCAAAGCAUUAAGCAAUCAAACAUUUGAUUUUCAUUUAUCGCGUAAUCAAGCGUAAAAAUAGCUUCGUGACCAAAGUAACUCAUCAUCGUCCUGGGCCC-- ((..(((..(((.....(((.((((((((((....))))))....((((.(((........)))))))....)))).))).)))..)))..)).................-- ( -18.90, z-score = -0.13, R) >droGri2.scaffold_15245 14941256 100 + 18325388 ------UGCUGGCCAAGCAUUAAGCAAUCAAACAUUUGAUUUUCAUUUAUCGUGUAAUCAAGCGUAAAAAUAGCUUCGUGACCAAAGUAACUCAUCAUCGCUGUCC------ ------((((.....))))...(((((((((....)))))).....((((..((..((.((((.........)))).))...))..)))).........)))....------ ( -13.70, z-score = 0.62, R) >consensus ______UUAGUCCCAGGCAUUAAGCAAUCAAACGUUUGAUUUUCAUUUAUCGUGUAAUCAAGCGUAAAAAUAGCUUCGUGACCAAAGUGACUCAUCAUCAUCAUCC______ ...............(((((.((((((((((....))))))....((((.(((........)))))))....)))).))).))............................. (-12.88 = -13.01 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:38 2011