| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,669,856 – 17,669,947 |
| Length | 91 |
| Max. P | 0.997583 |
| Location | 17,669,856 – 17,669,947 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 52.94 |
| Shannon entropy | 0.74303 |
| G+C content | 0.35618 |
| Mean single sequence MFE | -20.80 |
| Consensus MFE | -7.36 |
| Energy contribution | -9.05 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.13 |
| SVM RNA-class probability | 0.997583 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17669856 91 - 21146708 GGGUUUGUCGUCCUUUGUAAACUAAUUUGCUUGGAAAAUGGCAAACGCUCGCACACAUAUAUAUAUAGAUAUAUAUGUAUUGUGUACUACC------ (.(((((((((((...(((((....)))))..)))...)))))))).)..(((((.((((((((((....)))))))))))))))......------ ( -26.90, z-score = -3.68, R) >droYak2.chr2R 9628024 71 + 21139217 GGGUUUGUCGUCUUUUGUAAACUAAUUUGCUUGGAAAAUGGCAAACUCUCGCAUAUAUAU-UGUGUACAACC------------------------- (((((((((((.(((.(((((....)))))...))).)))))))))))..(((((.....-)))))......------------------------- ( -18.30, z-score = -3.27, R) >droEre2.scaffold_4845 11808824 71 - 22589142 GGGUUUGUCGUCCUUUGUAAACUAAUUUGCUUGGAAAAUGGCAAACUCUCGCAUAUAUAU-UGUGUGCAACC------------------------- (((((((((((((...(((((....)))))..)))...))))))))))..((((((....-.))))))....------------------------- ( -22.90, z-score = -4.51, R) >triCas2.ChLG7 11630896 96 - 17478683 -UGAUGAUCGGUCUUUCUGAUUGAGUUCACAUCAAUGAAAUCAAGCCAAUGUAUAUAAAAGGAUAUUUUAUGAAGAUAAUCUCACUUGGAUAUUGCU -(((((.((((((.....)))))).....))))).......(((.((((.((.(((((((.....)))))))..((.....))))))))...))).. ( -15.10, z-score = 0.99, R) >consensus GGGUUUGUCGUCCUUUGUAAACUAAUUUGCUUGGAAAAUGGCAAACUCUCGCAUAUAUAU_UAUAUACAACC_________________________ (((((((((.(((...((((......))))..)))....)))))))))................................................. ( -7.36 = -9.05 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:37 2011