| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,638,848 – 17,638,906 |
| Length | 58 |
| Max. P | 0.526949 |
| Location | 17,638,848 – 17,638,906 |
|---|---|
| Length | 58 |
| Sequences | 8 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 93.01 |
| Shannon entropy | 0.13933 |
| G+C content | 0.47920 |
| Mean single sequence MFE | -12.79 |
| Consensus MFE | -10.32 |
| Energy contribution | -10.46 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.526949 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17638848 58 + 21146708 UCUGGCACUCUGAAACACAUGUCACGCACUUCCCGAACAACUGGGAAAAGCUGGAAAA ((..((....(((........))).....((((((......))))))..))..))... ( -13.70, z-score = -1.96, R) >droSim1.chr2R 16282052 57 + 19596830 UCUGGCACUCUGAAACACAUGUCACGCACUUCCCGAACAACUGGGAAAAGCUGGCAA- ...................(((((.((..((((((......))))))..))))))).- ( -15.00, z-score = -2.21, R) >droSec1.super_9 961171 57 + 3197100 UCUGGCACUCUGAAACACAUGUCACGCACUUCCCGAACAACUGGGAAAAGCUGGAAA- ((..((....(((........))).....((((((......))))))..))..))..- ( -13.70, z-score = -1.95, R) >droYak2.chr2R 9599666 57 - 21139217 UCUGGCACUCUGAAACACAUGUCACGCACUUCCCGAACAACUGGGAAAAGCUGGAAA- ((..((....(((........))).....((((((......))))))..))..))..- ( -13.70, z-score = -1.95, R) >droEre2.scaffold_4845 11780894 57 + 22589142 UCUGGCACUUUGAAACACAUGUCACGCACUUCUCGAACAACUGGGAAAAGCUGGAAA- ((..((....(((........))).....((((((......))))))..))..))..- ( -10.80, z-score = -1.14, R) >droAna3.scaffold_13266 11028868 57 + 19884421 CCUGGCACUCCAGAACACAUGUCACGCACUUCUCAAACAACUGGGAAAAGCUGGAAA- .((((....))))........(((.((..((((((......))))))..)))))...- ( -11.80, z-score = -0.96, R) >dp4.chr3 15198651 57 + 19779522 UCUGGCACUUUCCAACACAUGUCACGCACUUCUCGAACAACUUGGAAAAGCUGGAAA- ((..((..(((((((....(((..((.......)).)))..))))))).))..))..- ( -11.80, z-score = -1.76, R) >droPer1.super_4 3310617 57 - 7162766 UCUGGCACUUUCCAACACAUGUCACGCACUUCUCGAACAACUUGGAAAAGCUGGAAA- ((..((..(((((((....(((..((.......)).)))..))))))).))..))..- ( -11.80, z-score = -1.76, R) >consensus UCUGGCACUCUGAAACACAUGUCACGCACUUCCCGAACAACUGGGAAAAGCUGGAAA_ ((..((.............((.....)).((((((......))))))..))..))... (-10.32 = -10.46 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:34 2011