| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,618,471 – 17,618,582 |
| Length | 111 |
| Max. P | 0.889741 |
| Location | 17,618,471 – 17,618,582 |
|---|---|
| Length | 111 |
| Sequences | 11 |
| Columns | 132 |
| Reading direction | forward |
| Mean pairwise identity | 69.37 |
| Shannon entropy | 0.62211 |
| G+C content | 0.50492 |
| Mean single sequence MFE | -35.31 |
| Consensus MFE | -17.03 |
| Energy contribution | -17.11 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.889741 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17618471 111 + 21146708 --------------CAGGCGAGAGAGUGUCCAAACUUCCGCGACGGUGGCAAGUGCAGCAAGGCGUCGUUUUUUUAAUAGAGUCAUAACUUGCUGCCAACUAAUGGGCUUGCAA-CCAAAACACGC------ --------------...(((.((.(((......))))))))...(((.((((((((((((((..((..((((......))))..))..))))))))((.....)).)))))).)-)).........------ ( -33.40, z-score = -0.68, R) >droSec1.super_9 944160 111 + 3197100 --------------CAGGCGCGAGAGUGUCCAAACUUCCGCGACGGUGGCAAGUGCAGCAAGGCGUUGCUUUUUUAAUAGAGUCAUAACUUGCUGCCAACUAAUGGGCUUGCAA-CCAAAACACGC------ --------------..(.((((..(((......)))..)))).)(((.((((((((((((((..((.(((((......))))).))..))))))))((.....)).)))))).)-)).........------ ( -41.20, z-score = -2.40, R) >droSim1.chr2R 16270491 111 + 19596830 --------------CAGGCGCGAGAGUGUCCAAACUUCCGCGACGGUGGCAAGUGCAGCAAGGCGUUGCUUUUUUAAUAGAGUCAUAACUUGCUGCCAACUAAUGGGCUUGCAA-CCAAAUCACGC------ --------------..(.((((..(((......)))..)))).)(((.((((((((((((((..((.(((((......))))).))..))))))))((.....)).)))))).)-)).........------ ( -41.20, z-score = -2.45, R) >droAna3.scaffold_13266 11015833 96 + 19884421 -----------------------------CAGAACUUGCGCGACGGUGGCAAGUGCAGCAAGGCGUUGCUUUUUUAAUAGAGUCAUAACUUGCUGCCAACUAAUGGGCUUGCAA-CCAAAACAGGC------ -----------------------------.....((((......(((.((((((((((((((..((.(((((......))))).))..))))))))((.....)).)))))).)-))....)))).------ ( -30.40, z-score = -0.96, R) >droEre2.scaffold_4845 11769161 108 + 22589142 ------------------CAGGCGAGUGUCCAAACUUCCGCGACGGUGGCAAGUGCAGCAAGGCGUUGCUUUUUUAAUAGAGUCAUAACUUGCUGCCAACUAAUGGGCUUGCAAACCAAAACACGC------ ------------------...((((((..(((.((((((((....)))).))))((((((((..((.(((((......))))).))..)))))))).......)))))))))..............------ ( -36.40, z-score = -1.66, R) >droYak2.chr2R 9587777 107 - 21139217 ------------------CAGGCGAGUGUCCAAACUUCCGCGACGGUGGCAAGUGCAGCAAGGCGUUGCUUUUUUAAUAGAGUCAUAACUUGCUGCCAACUAAUGGGCUUGCAA-CCAAAGCAGAA------ ------------------..((.((((......))))))((...(((.((((((((((((((..((.(((((......))))).))..))))))))((.....)).)))))).)-))...))....------ ( -37.20, z-score = -1.65, R) >dp4.chr3 15183991 106 + 19779522 -------------------CGGGGGCAGCGGUGGCAGCAACGACGGUGGCAAGUGCAGCAAGGCGUUGCUUUUUUAAUAGAGUCAUAACUUGCUGCCAACUAAUGGGAUUCGAA-CCAAAACACGC------ -------------------.(..(((((((((((((((((((...((.((....)).))....))))))).(((....))))))))....)))))))..)...(((........-)))........------ ( -32.90, z-score = -0.82, R) >droPer1.super_4 3295901 106 - 7162766 -------------------CGGGGGCAGCGGUGGCAGCAACGACGGUGGCAAGUGCAGCAAGGCGUUGCUUUUUUAAUAGAGUCAUAACUUGCUGCCAACUAAUGGGAUUCGAA-CCAAAACACGC------ -------------------.(..(((((((((((((((((((...((.((....)).))....))))))).(((....))))))))....)))))))..)...(((........-)))........------ ( -32.90, z-score = -0.82, R) >droWil1.scaffold_180701 1006995 102 - 3904529 -------------------------CAGAGCGAGAAAGCGGCAAAGCGCCAAGUGCAGUGAGGCGUUGCUUUUUUAAUAGAGUCAUAACUUGCUGCCAACUAAUGGGUACCAAAUGCCACACAGUAA----- -------------------------....((......))((((..(..((.(((((((..((..((.(((((......))))).))..))..))))..)))....))..)....)))).........----- ( -27.60, z-score = -0.33, R) >droMoj3.scaffold_6496 10031569 132 - 26866924 CAGGCGACAGUCGCAAUUCGCAAUUCGCAUUGGCAAGCCGAAAAGUUGCCAAGUGCAGCGAGGCGUAGCUUUUUUAAUAGAGUCAUAACUUGGCCUCAACUAAUGGGAGCUCGCCGAGCAACUGAACCAGGC ..((...((((.((...((((....(((.(((((((.(......)))))))))))..))))((((.(((((((......((((((.....))).))).......)))))))))))..)).))))..)).... ( -42.02, z-score = -0.90, R) >droGri2.scaffold_15245 14992555 107 - 18325388 CAGGCGACAUUCGAGCCAAAAGUUUCGCAGUGGACA-----AACACUGCCAAGUGCAGCGAGGCGUAGCUUUUUUAAUAGAGUCAUAACUUGGCUCCAACUAAUGGGGCUCC-------------------- ..(((..((((.(((((((..(((((((((((....-----..))))((.....)).)))))))((..((((......))))..))...))))))).....))))..)))..-------------------- ( -33.20, z-score = -1.64, R) >consensus __________________CGGGAGACUGUCCAAACUUCCGCGACGGUGGCAAGUGCAGCAAGGCGUUGCUUUUUUAAUAGAGUCAUAACUUGCUGCCAACUAAUGGGCUUGCAA_CCAAAACACGC______ ............................................((((((((((((......))((.(((((......))))).)).))))))))))................................... (-17.03 = -17.11 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:34 2011