| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,606,356 – 17,606,459 |
| Length | 103 |
| Max. P | 0.887221 |
| Location | 17,606,356 – 17,606,459 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 77.73 |
| Shannon entropy | 0.33200 |
| G+C content | 0.42306 |
| Mean single sequence MFE | -28.60 |
| Consensus MFE | -22.65 |
| Energy contribution | -22.33 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.887221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17606356 103 + 21146708 UGGGUGGCAAGCGCAGUGUGAUCGCUAUCUAUCUAUUAUCUAUUAACAAUUUUGGUUGUUUUAUUGCGUCAUGUGUGGAUCGCUAGGGUCUAGA------CUUCCAUCA---------- ..(((((...((((((((.(((.((((.........................)))).))).))))))))...((.((((((.....)))))).)------)..))))).---------- ( -25.91, z-score = -0.78, R) >droSim1.chr2R 16257899 98 + 19596830 UGGGUGGCAAGCGCAGUGUGAUCGCUAUCUAU-----------UAACAAUUUUGGUUGUUUUAUUGCGUCAUAUGCGGAUCGCUAAGGUCUAUAGCUGCACUUUCAUCA---------- ..(((((.(((.(((((((((.(((.......-----------.((((((....)))))).....)))))))....(((((.....)))))...))))).)))))))).---------- ( -29.02, z-score = -1.75, R) >droSec1.super_9 932267 98 + 3197100 UGGGUGGCAAGCGCAGUGUGAUCGCUAUCUAC-----------UAACAAUUUUGGUUGUUUUAUUGCGUCAUGUGUGGAUCGCUAAGGUCUAUAGCUGCACUUUCAUCA---------- ..(((((.(((.(((((((((.(((.......-----------.((((((....)))))).....))))))).((((((((.....))))))))))))).)))))))).---------- ( -32.42, z-score = -2.67, R) >droEre2.scaffold_4845 11755471 108 + 22589142 UGGGUGGCAAGCGCAUUGGGACCGCUAUCUAU-----------UACCAUUCUUGGCUGUUUCAUUGCGUCAUGUGUAGAUCACUAACAUCUAUAAAUGCACGUUUAUCAAAUCAAGUUA (((.((..(((((((.((..((.((((.....-----------.........)))).))..)).)))(((((.(((((((.......))))))).))).))))))..))..)))..... ( -27.04, z-score = -1.24, R) >consensus UGGGUGGCAAGCGCAGUGUGAUCGCUAUCUAU___________UAACAAUUUUGGUUGUUUUAUUGCGUCAUGUGUGGAUCGCUAAGGUCUAUAGCUGCACUUUCAUCA__________ ..(((((...((((((((..((.((((.........................)))).))..))))))))....((((((((.....)))))))).........)))))........... (-22.65 = -22.33 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:31 2011