| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,596,981 – 17,597,078 |
| Length | 97 |
| Max. P | 0.898512 |
| Location | 17,596,981 – 17,597,078 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 97.25 |
| Shannon entropy | 0.03787 |
| G+C content | 0.42612 |
| Mean single sequence MFE | -28.50 |
| Consensus MFE | -26.39 |
| Energy contribution | -26.83 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.898512 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17596981 97 - 21146708 GCACUCUCUUCGACCGACUGAGUGUGUUGGUGAGCUGUGUAAAAUACACGCGAGUAAAGUGCGUGUAAAAUGUGACAUAAUGUAAUGCGUAAUGUAU ((((((((.((.((((((.......))))))))((.(((((...))))))))))...)))))............((((.(((.....))).)))).. ( -26.10, z-score = -1.35, R) >droSec1.super_9 922810 97 - 3197100 GCACUCUCUUCGACCGACUGAGUGUGUUGGUGAGCAGAGUAAAAUACGCGCGUGUAAAGUGCGUGUAAAAUGUGACAUAAUGUAAUGCGUAAUGUAU ..(((((.(((.((((((.......))))))))).)))))...((((((((.......))))))))........((((.(((.....))).)))).. ( -30.20, z-score = -2.37, R) >droSim1.chr2R 16247626 97 - 19596830 GCACUCUCUUCGACCGACUGAGUGUGUUGGUGAGCAGAGUAAAAUACACGCGUGUAAAGUGCGUGUAAAAUGUGACAUAAUGUAAUGCGUAAUGUAU ..(((((.(((.((((((.......))))))))).)))))....((((((((.......)))))))).......((((.(((.....))).)))).. ( -29.20, z-score = -2.20, R) >consensus GCACUCUCUUCGACCGACUGAGUGUGUUGGUGAGCAGAGUAAAAUACACGCGUGUAAAGUGCGUGUAAAAUGUGACAUAAUGUAAUGCGUAAUGUAU ..(((((.(((.((((((.......))))))))).)))))....((((((((.......)))))))).......((((.(((.....))).)))).. (-26.39 = -26.83 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:27 2011