| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,594,369 – 3,594,512 |
| Length | 143 |
| Max. P | 0.928726 |
| Location | 3,594,369 – 3,594,512 |
|---|---|
| Length | 143 |
| Sequences | 13 |
| Columns | 150 |
| Reading direction | forward |
| Mean pairwise identity | 90.11 |
| Shannon entropy | 0.24136 |
| G+C content | 0.39890 |
| Mean single sequence MFE | -36.31 |
| Consensus MFE | -29.13 |
| Energy contribution | -29.12 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.928726 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3594369 143 + 23011544 -GGCACUACUCCGAUAUCAGUUUUAUGGGUGGCCCACAUGUC-GAGGGCCAUAAAGUAGAAAAUUAUCACCUUUUAAAU-UGAAGAAUCCAA---ACAAAUUGAAACGGAUAUCGUGUUUAAGUGCUA-UCGACAUCACUUCUAUUAGCC -((((((...((((((((.((((((((((((((((.(.....-).)))))))..................((((.....-.))))...))).---......)))))).))))))).)....)))))).-..................... ( -36.11, z-score = -2.21, R) >droSim1.chr2L 3551398 143 + 22036055 -GGCACUACUCCGAUAUCAGUUUUAUGGGUGGCCCACAUGUC-GAGGGCCAUAAAGUAGAAAAUUAUCACCUUUUAAAU-UGAAGAAUCCAA---ACAAAUUGAAACGGAUAUCGUGUUUAAGUGCUA-UCGACAUCACUUCUAUUAGCC -((((((...((((((((.((((((((((((((((.(.....-).)))))))..................((((.....-.))))...))).---......)))))).))))))).)....)))))).-..................... ( -36.11, z-score = -2.21, R) >droSec1.super_5 1695187 143 + 5866729 -GGCACUACUCCGAUAUCAGUUUUAUGGGUGGCCCACAUGUC-GAGGGCCAUAAAGUAGAAAAUUAUCACCUUUUAAAU-UGAAGAAUCCAA---ACAAAUUGAAACGGAUAUCGUGUUUAAGUGCUA-UCGACAUCACUUCUAUUAGCC -((((((...((((((((.((((((((((((((((.(.....-).)))))))..................((((.....-.))))...))).---......)))))).))))))).)....)))))).-..................... ( -36.11, z-score = -2.21, R) >droYak2.chr2L 3586339 143 + 22324452 -GGCACUACUCCGAUAUCAGUUUUAUGGGUGGCCCACAUGUC-GAGGGCCAUAAAGUAGAAAAUUAUCACCUUUUAAAU-UGAAGAAUCCAA---ACAAAUUGAAACGGAUAUCGUGUUUAAGUGCUA-UCGACAUCACUUCUAUUAGCC -((((((...((((((((.((((((((((((((((.(.....-).)))))))..................((((.....-.))))...))).---......)))))).))))))).)....)))))).-..................... ( -36.11, z-score = -2.21, R) >droEre2.scaffold_4929 3633145 143 + 26641161 -GGCACUACUCCGAUAUCAGUUUUAUGGGUGGCCCACAUGUC-GAGGGCCAUAAAGUAGAAAAUUAUCACCUUUUAAAU-UGAAGAAUCCAA---ACAAAUUGAAACGGAUAUCGUGUUUAAGUGCUA-UCGACAUCACUUCUAUUAGCC -((((((...((((((((.((((((((((((((((.(.....-).)))))))..................((((.....-.))))...))).---......)))))).))))))).)....)))))).-..................... ( -36.11, z-score = -2.21, R) >droAna3.scaffold_12916 5645144 143 + 16180835 -GGCACUACUCCGAUAUCAGUUUUAUGGGUGGCCCACAUGUC-GAGGGCCAUAAAGUAGAAAAUUAUCACCUUUUAAAU-UGAAGAAUCCAA---ACAAAUUGAAACGGAUAUCGUGUUUAAGUGCUA-UCGACAUCACUUCUAUUAGCC -((((((...((((((((.((((((((((((((((.(.....-).)))))))..................((((.....-.))))...))).---......)))))).))))))).)....)))))).-..................... ( -36.11, z-score = -2.21, R) >droPer1.super_1 3642948 143 - 10282868 -GGCACUACUCCGAUAUCAGUUUUAUGGGUGGCCCACAUGUC-GAGGGCCAUAAAGUAGAAAAUUAUCACCUUUUAAAU-UGAAGAAUCCAA---ACAAAUUGAAACGGAUAUCGUGUUUAAGUGCUA-UCGACAUCACUUCUAUUAGCC -((((((...((((((((.((((((((((((((((.(.....-).)))))))..................((((.....-.))))...))).---......)))))).))))))).)....)))))).-..................... ( -36.11, z-score = -2.21, R) >dp4.chr4_group3 6543198 143 - 11692001 -GGCACUACUCCGAUAUCAGUUUUAUGGGUGGCCCACAUGUC-GAGGGCCAUAAAGUAGAAAAUUAUCACCUUUUAAAU-UGAAGAAUCCAA---ACAAAUUGAAACGGAUAUCGUGUUUAAGUGCUA-UCGACAUCACUUCUAUUAGCC -((((((...((((((((.((((((((((((((((.(.....-).)))))))..................((((.....-.))))...))).---......)))))).))))))).)....)))))).-..................... ( -36.11, z-score = -2.21, R) >droWil1.scaffold_180708 2987242 143 - 12563649 -GGCACUACUCCGAUAUCAGUUUUAUGGGUGGCCCACAUGUC-GUGGGCCAUAAAGUAGAAAAUUAUCACCUUUUAAAU-UGAAGAAUCCAA---ACAAAUUGAAACGGAUAUCGUGUUUAAGUGCUA-UCGACAUCACUUCUAUUAGCC -((((((...((((((((.((((((((((((((((((.....-)))))))))..................((((.....-.))))...))).---......)))))).))))))).)....)))))).-..................... ( -40.81, z-score = -3.49, R) >droMoj3.scaffold_6500 14210118 143 - 32352404 -GGCACUACUCCGAUAUCAGUUUUAUGGGUGGCCCACAUGUC-GAGGGCCAUAAAGUAGAAAAUUAUCACCUUUUAAAU-UGAAGAAUCCAA---ACAAAUUGAAACGGAUAUCGUGUUUAAGUGCUA-UCGACAUCACUUCUAUUAGCC -((((((...((((((((.((((((((((((((((.(.....-).)))))))..................((((.....-.))))...))).---......)))))).))))))).)....)))))).-..................... ( -36.11, z-score = -2.21, R) >droGri2.scaffold_15126 4238013 143 + 8399593 -GGCACUACUCCGAUAUCAGUUUUAUGGGUGGCCCACAUGUC-GAGGGCCAUAAAGUAGAAAAUUAUCACCUUUUAAAU-UGAAGAAUCCAA---ACAAAUUGAAACGGAUAUCGUGUUUAAGUGCUA-UCGACAUCACUUCUAUUAGCC -((((((...((((((((.((((((((((((((((.(.....-).)))))))..................((((.....-.))))...))).---......)))))).))))))).)....)))))).-..................... ( -36.11, z-score = -2.21, R) >droVir3.scaffold_12963 5035361 143 - 20206255 -GAGAGUACUCCGAUAUCAGUUUUAUGGGUGGCCCACAUGUC-GAGGGCCAUAAAGUAGAAAAUUAUCACCUUUUAAAU-UGAAGAAUCCAA---ACAAAUUGAAACGGAUAUCGUGUUUAAGUGCUA-UCGACAUCACUUCUAUUAGCC -((.((((((((((((((.((((((((((((((((.(.....-).)))))))..................((((.....-.))))...))).---......)))))).))))))).)....)))))).-))................... ( -34.91, z-score = -1.91, R) >apiMel3.Group1 25801329 150 - 25854376 AGGAUUCGUGUCAUUGUCAAUGGGUAAUCAGGUCAGUGGGCUAGUGGGACGACCACUUUCAAUUUCAGUCCUUCUAACUGUGUGCAACUCGCUGUGCCGCGUGCGUCGUAUAUUAUCUCGCGCUUUCGCUCUCCAUCUCCUUUUUUCACC .......(((.........(((((......((((((((((..(((((.....)))))........((((.......)))).......))))))).)))(((.(((.((..........)))))...)))..)))))..........))). ( -35.21, z-score = 0.31, R) >consensus _GGCACUACUCCGAUAUCAGUUUUAUGGGUGGCCCACAUGUC_GAGGGCCAUAAAGUAGAAAAUUAUCACCUUUUAAAU_UGAAGAAUCCAA___ACAAAUUGAAACGGAUAUCGUGUUUAAGUGCUA_UCGACAUCACUUCUAUUAGCC .((((((...((((((((..((((((..(((((((.(......).)))))))...)))))).........((((.......)))).......................))))))).)....))))))....................... (-29.13 = -29.12 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:09 2011