| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,578,625 – 17,578,719 |
| Length | 94 |
| Max. P | 0.668062 |
| Location | 17,578,625 – 17,578,719 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 75.00 |
| Shannon entropy | 0.42618 |
| G+C content | 0.47305 |
| Mean single sequence MFE | -25.21 |
| Consensus MFE | -12.54 |
| Energy contribution | -14.68 |
| Covariance contribution | 2.14 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17578625 94 - 21146708 UGAAAGGAAUAACCCUAUGUGACAGCUGUCACACGUGCCAGUGAUAAAAAAUCCCGCACACCUUCCAACGGAACGCGUUAGUGUGUCGUUUUUU------------------ .....((((........((((((....)))))).((((..(.(((.....)))).))))...))))((((..((((....))))..))))....------------------ ( -25.00, z-score = -1.87, R) >droSim1.chr2R 16227580 94 - 19596830 UGGAAGGAGUACCCCUACGUGACAGCUGUCACACGUGCCAGUGAUAAAAAAUCCCGCACACCUUCCAACGGAACGCGUUAGUGUGUCGUUUUUU------------------ .((((((...........(((((....)))))..((((..(.(((.....)))).)))).))))))((((..((((....))))..))))....------------------ ( -31.20, z-score = -2.86, R) >droSec1.super_9 904348 94 - 3197100 UGGAAGGAGUACCCCUACGUGACAGCUGUCACACGUGCCAGUGAUAAAAAAUCCCGCACACCUUUCAACGGAACGCGUUAGUGUGUCGUUUUUU------------------ .((((((...........(((((....)))))..((((..(.(((.....)))).)))).))))))((((..((((....))))..))))....------------------ ( -28.30, z-score = -1.91, R) >droYak2.chr2R 9546775 94 + 21139217 UGAGGGAAUACCCCCUAUGUGACAGCUGUCACACGUGCCAGUGAUAAAAAAUCCCGCACACCUACCAUCCAAACGCGUUAGUGUGUCGUUUUUU------------------ ..((((......)))).((((((....))))))..............((((..(.((((((..(((........).))..)))))).)..))))------------------ ( -22.10, z-score = -1.26, R) >droEre2.scaffold_4845 11727188 94 - 22589142 UGGAAGGAGUACCCCUAUGUGACAGCUGUCACACGUGCCAGUGAUAAAAAAUCCCGCACACCCUCCAUCCAAACGCGUUAGUGUGUCGUUUUUU------------------ ((((.((((........((((((....)))))).((((..(.(((.....)))).))))...)))).)))).((((....))))..........------------------ ( -27.20, z-score = -2.86, R) >droAna3.scaffold_13266 10977657 111 - 19884421 UAAAAACAAACAUCCUUCGCCCGGACUGUCACAUGUGACAAUGACAAAAAAUACCACACGCCAAUUCGCCGCA-GUACCACUGUCACACUUGUAGUUUUCCGUGAAAUUUUU ...............(((((..((((((.((..(((((((.((..............................-....)).)))))))..))))))))...)))))...... ( -17.48, z-score = -0.15, R) >consensus UGAAAGGAGUACCCCUACGUGACAGCUGUCACACGUGCCAGUGAUAAAAAAUCCCGCACACCUUCCAACCGAACGCGUUAGUGUGUCGUUUUUU__________________ (((((((...........(((((....)))))..((((..((........))...)))).))))))).....((((....))))............................ (-12.54 = -14.68 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:26 2011