| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,564,093 – 17,564,189 |
| Length | 96 |
| Max. P | 0.896877 |
| Location | 17,564,093 – 17,564,189 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 65.90 |
| Shannon entropy | 0.56086 |
| G+C content | 0.59209 |
| Mean single sequence MFE | -37.98 |
| Consensus MFE | -18.68 |
| Energy contribution | -21.94 |
| Covariance contribution | 3.26 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.896877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17564093 96 - 21146708 GACUCGCCUCCAGUGGAUCUGGGUCGUGGUAUUGGGUUCGUACUUGGACGUAUGUUCAGAUUCGGUGUCAGAUUCGGGUUCGGUGGCGGCGUCUGU--------------------- .((.((((.(((.((((((((((((.((..(((((((((((((......)))))....))))))))..)))))))))))))).))).))))...))--------------------- ( -40.90, z-score = -3.42, R) >droSim1.chr2R 16212990 96 - 19596830 GACUCGCCUCCAGUGGAUCUGGGUCGUGGUAUUGGGUUCGUACUUGGACGCACGUUCAGAUUCGGUGUCGGAUUCGGGUUUGUUGGCGGCGGCUGU--------------------- ...(((((.((((..((((((((((.((..((((((((......(((((....)))))))))))))..))))))))))))..)))).)))))....--------------------- ( -40.70, z-score = -2.74, R) >droSec1.super_9 889943 96 - 3197100 GACUCGCCUCCAGUGGAUCUGGGUCGUGGUAUUGGGUUCGUACUUGGACGUACGUUAAGAUUCGGUGUCGGAUUAGGGAUCGGUGGCGACGGCUGU--------------------- ...(((((.((....(((((.((((.((..(((((((((((((......)))))....))))))))..))))))..))))))).))))).......--------------------- ( -31.50, z-score = -0.18, R) >droYak2.chr2R 9531858 117 + 21139217 GACUCGCCACCUGUGGAUCUGGGUCGUGGUAUUGGGUUCGUACUUGGACCUAGGUUCAGAUUUGCUGUCGCAUUCGGAUUCGGGAUCGGUAGCGGUGGCGGUGGCGGUGGCGGCUGU ...(((((((((.((((((((((((..(((((.......)))))..)))))))))))).)...((..((((..(((...(((....)))...)))..))))..)))))))))).... ( -51.10, z-score = -2.68, R) >droAna3.scaffold_13266 10962790 78 - 19884421 UUGAUGCCCGCAGUGGACCUGGGACGGGGUUUCGGCUUCGGCGUCG---------UCGGUUUCUGGCUUGGAUCGGGAUGGGGCGGA------------------------------ ....(((((.((.(.((.(..((.(.(((..(((((.........)---------))))..))).)))..).)).)..)))))))..------------------------------ ( -25.70, z-score = 1.24, R) >consensus GACUCGCCUCCAGUGGAUCUGGGUCGUGGUAUUGGGUUCGUACUUGGACGUACGUUCAGAUUCGGUGUCGGAUUCGGGUUCGGUGGCGGCGGCUGU_____________________ ....((((.(((.((((((((((((.((..((((((((......(((((....)))))))))))))..)))))))))))))).))).)))).......................... (-18.68 = -21.94 + 3.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:25 2011