| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,561,183 – 17,561,297 |
| Length | 114 |
| Max. P | 0.608767 |
| Location | 17,561,183 – 17,561,297 |
|---|---|
| Length | 114 |
| Sequences | 8 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 69.46 |
| Shannon entropy | 0.60125 |
| G+C content | 0.57209 |
| Mean single sequence MFE | -38.56 |
| Consensus MFE | -21.70 |
| Energy contribution | -21.69 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.26 |
| Mean z-score | -0.63 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.608767 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17561183 114 - 21146708 --CCACGAAUCCCUCGGAACGGGGGGACUUUUAAGUGGCAGUGCCGGAG--AAAUCCUUGGCUAAUGUCGUGUUAGCCCCCAAAAACCCGCCCCUUGU-GGGGUCCAACUCGAACCCCC --...(((.......((....(((((.((..((...((((..((((((.--...)))..)))...)))).))..)))))))......))(((((....-))))).....)))....... ( -38.60, z-score = -0.25, R) >droPer1.super_2 5878111 112 + 9036312 CCCUCUUGGGUUCGGGGUGGGGGCUGACUUUUAAGUGGCAGUGACGGGGGAAAAUCCUUGGCUAAUGUCGUGAUAGCCCCCGACUACCCCAUGGCGAC-CGACUCCAGCAAAA------ .....((((..((((.((((((((((.((.......))))))..((((((...(((..((((....)))).)))..))))))....)))))).....)-)))..)))).....------ ( -43.50, z-score = -0.68, R) >dp4.chr3 16811774 112 + 19779522 CCCUCUUGGGUUCGGGGUGGGGGCUGACUUUUAAGUGGCAGUGACGGGGGAAAAUCCUUGGCUAAUGUCGUGAUAGCCCCCGACUACCCCAUGGCGAC-CGACUCCAGCAAAA------ .....((((..((((.((((((((((.((.......))))))..((((((...(((..((((....)))).)))..))))))....)))))).....)-)))..)))).....------ ( -43.50, z-score = -0.68, R) >droAna3.scaffold_13266 10959856 91 - 19884421 ---------------------GGGGGACUUUUAAGUGGCAGUGCCGGAG--AAAUCCUUGGCUAAUGUCGUGAUAGCCCCACCGCCCAACUUGGUCAGCUCAGUUCAACAAAAA----- ---------------------.((((.((.(((...((((..((((((.--...)))..)))...)))).))).)))))).......((((.((....)).)))).........----- ( -25.90, z-score = -0.02, R) >droEre2.scaffold_4845 11709512 105 - 22589142 -----------CCACCAGUG-GGGGGACUUUUAAGUGGCAGUGCCGGAG--AAAUCCUUGGCUAAUGUCGUGUUAGCCCCCAAAAACCGCCCCCUUUUAGGGGUCCAACUCGCACCCCA -----------......(((-(((((.((..((...((((..((((((.--...)))..)))...)))).))..))))))).......(((((......)))))......)))...... ( -37.00, z-score = -0.60, R) >droYak2.chr2R 9528826 106 + 21139217 -----------CCACCAGAGAGGGGGACUUUUAAGUGGCAGUGCCGGAG--AAAUCCUUGGCUAAUGUCGUGUUAGCCCCCAAACACCGCCCCCUUGGGGGGGUACAACUCGCACCACA -----------......(((.(((((.((..((...((((..((((((.--...)))..)))...)))).))..)))))))....(((.((((....)))))))....)))........ ( -42.80, z-score = -1.46, R) >droSec1.super_9 886977 112 - 3197100 --CCACGAAAACCUCGGAAC-GGGGGACUUUUAAGUGGCAGUGCCGGAG--AAAUCCUUGGCUAAUGUCGUGUUAGCCCCCAAAAA-CCGCCCCUUGU-GGGGUCCAACUCGAACCCCC --...........((((...-(((((.((..((...((((..((((((.--...)))..)))...)))).))..))))))).....-..(((((....-))))).....))))...... ( -38.00, z-score = -0.82, R) >droSim1.chr2R 16210004 113 - 19596830 --CCACGAAACCCUCGGAACGGGGGGACUUUUAAGUGGCAGUGCCGGAG--AAAUCCUUGGCUAAUGUCGUGUUAGCCCCCAAAAA-CCGCCCCUUGU-GGGGUCCAACUCGAACCCCC --...(((.......((....(((((.((..((...((((..((((((.--...)))..)))...)))).))..))))))).....-))(((((....-))))).....)))....... ( -39.20, z-score = -0.52, R) >consensus __C________CCUCGGAAGGGGGGGACUUUUAAGUGGCAGUGCCGGAG__AAAUCCUUGGCUAAUGUCGUGUUAGCCCCCAAAAACCCCCCCCUUGU_GGGGUCCAACUCGAACCCC_ .....................(((((.((..((...((((..((((((......)))..)))...)))).))..))))))).........((((.....))))................ (-21.70 = -21.69 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:23 2011