| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,527,356 – 17,527,463 |
| Length | 107 |
| Max. P | 0.500000 |
| Location | 17,527,356 – 17,527,463 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 73.80 |
| Shannon entropy | 0.47589 |
| G+C content | 0.31567 |
| Mean single sequence MFE | -19.58 |
| Consensus MFE | -10.33 |
| Energy contribution | -11.14 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 17527356 107 + 21146708 CACAUCGAAGGCGCAGUUUAAUU------AUUAAUAUGGCGCCGCUUGUGUGCUAACGGAAA-CUUUCAAAAAU--AUAUAUU-UUUGAAAAAUAACAAUAUUGGAAUCUCACAACC-- ((((.(((.(((((...(((...------..)))....)))))..)))))))((((.(....-)((((((((((--....)))-)))))))..........))))............-- ( -22.90, z-score = -2.26, R) >droYak2.chr2R 9494297 111 - 21139217 UACAUCGAAGGCGCAGUUCAAUUUGAAUUAUUAAUAUGGCGCCGCUUGUGUGCUUACGAAAA-CAUUCAAUAAU--AC--AUU-UUUGAAAAAAAAACAAAUUGAAAUACCCAAAUC-- .........((.(...(((((((((.((((((.....((((((....).)))))...(((..-..)))))))))--..--.((-(((....))))).)))))))))...))).....-- ( -18.80, z-score = -0.92, R) >droEre2.scaffold_4845 11676017 111 + 22589142 UACAUCGAAGGCGCAGUUUAAUUAUAAUCAUUAAUAAUGCGUCGCUUGUGUGCUUACGAAAA-CUUUCAAUUAU--AC--AUU-UUUGAAAAAUAACAAAAUUGAAAUAACAAAAUC-- ....(((..((((((..(((((.......)))))...))))))((......))...)))...-.((((((((..--..--...-.((....))......))))))))..........-- ( -17.24, z-score = -0.77, R) >droSec1.super_9 853425 107 + 3197100 CACAUCGAAGGCGCAGUUAAAUU------AUAAAUAUUGCGCCGCUUGUGUGCUAACGAAAA-CUUUCAAAAAU--ACACAUU-UUUGAAAAAUAACAAUACUGGAAUCUGAGAACC-- ((((.(((.((((((((......------......))))))))..)))))))..........-.((((((((((--....)))-)))))))..........................-- ( -23.30, z-score = -2.83, R) >droSim1.chr2R 16175849 107 + 19596830 CACAUCGAAGGCGCAGUUAAGUU------AUUAAUAUUGCGCCGCUUGUGUGCUAACGAAAA-CUUUCAAAAAU--AUACAUU-UUUGAAAAAUAACAAUAUUGGAAUCUGAGAACC-- ((((.(((.(((((((((((...------.)))))..))))))..)))))))..........-.((((((((((--....)))-)))))))..........................-- ( -23.40, z-score = -2.27, R) >droWil1.scaffold_180699 2507299 107 - 2593675 AACAUUG----CGAAACGCAAUU--------GAGAAAUUUAUCGCUUGUGUGCCUAAGAAAAAUAUGCAAAAAUUUACGGAUUAUUUGAUUUAGAAAACAAAUGGAAUCUAAUUAUGGU ..((((.----....((((((.(--------((........))).))))))..(((((..(((((.................)))))..)))))......))))............... ( -11.83, z-score = 1.50, R) >consensus CACAUCGAAGGCGCAGUUAAAUU______AUUAAUAUUGCGCCGCUUGUGUGCUAACGAAAA_CUUUCAAAAAU__ACA_AUU_UUUGAAAAAUAACAAAAUUGGAAUCUCAAAACC__ (((((....((((((((..................))))))))....)))))................................................................... (-10.33 = -11.14 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:21 2011