| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,526,453 – 17,526,548 |
| Length | 95 |
| Max. P | 0.516807 |
| Location | 17,526,453 – 17,526,548 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 56.48 |
| Shannon entropy | 0.75340 |
| G+C content | 0.42153 |
| Mean single sequence MFE | -15.88 |
| Consensus MFE | -6.80 |
| Energy contribution | -7.17 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.30 |
| Mean z-score | -0.54 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.516807 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17526453 95 + 21146708 ACGCAUACCUUCGACUUACCGCCCUUAAUUUUCCAGCCAGCUGUUGGAAAAUCUGGCCCAAACUAAAGCUUAUAUUGUACAUAGAU-----AUUUUAGAU--------------- ....................(((....((((((((((.....))))))))))..))).....(((((....(((((.......)))-----)))))))..--------------- ( -15.90, z-score = -1.00, R) >droSim1.chr2R 16174922 87 + 19596830 ACGCAUUCCUUCGACUUUCCGCCCUUCAUUUUCCAGCCAGCUGUUGGAAAAUCUGGCUCAAAUUGUAG--------AUACAUUAAU-----AUUUCAGAU--------------- ....................(((....((((((((((.....))))))))))..))).....(((.((--------(((......)-----)))))))..--------------- ( -15.30, z-score = -0.97, R) >droSec1.super_9 852496 87 + 3197100 ACGCAUUCCUUCGACUUUCCGCCCUUCAUUUUCCAGCCAGCUGUUGGAAAAUCGGGCUCAAAUUGCAG--------AUACAUUAAU-----AUUUCAGAU--------------- ..(((.......(......)((((...((((((((((.....)))))))))).))))......)))..--------..........-----.........--------------- ( -19.30, z-score = -1.79, R) >droEre2.scaffold_4845 11675049 92 + 22589142 ACGCAUUCUUUCUGGCGGCCGCCGCUUAUUUUCCAGCCAGCUCUUGGAAAAUCUGAUGCU--CCCCAAAUCGGUUUAUACUUUGAU-----AUUUCAUA---------------- ..(((((......(((((...))))).(((((((((.......)))))))))..))))).--......(((((........)))))-----........---------------- ( -17.60, z-score = -0.07, R) >droYak2.chr2R 9493360 112 - 21139217 ACGCAGUCCUACUU---GCCGCCCCCCAUUUUCCAGCCAGCUGUAUGAAAAUCUGAUGCUUGCCCCAAAUCGGUGCAUGAAUUAAUUAUAAAGCUUAUACUUUGAUUUUUCAGAU ..((((......))---)).........((((((((....)))...)))))(((((....(((.((.....)).))).(((((((.((((.....))))..))))))).))))). ( -16.90, z-score = 0.19, R) >droAna3.scaffold_13266 10923695 94 + 19884421 ACAUAUUUUUCAGUUCCGAUCCCCAUAAUUUUCCGUAAUACUUCUGGGUAAUGUGCAACGCCCCCUUUCUUA----GUGACUUGCCCAC--AGUUCCCAC--------------- ............................................((((...((((((((((...........----)))..))))..))--)...)))).--------------- ( -10.30, z-score = 0.43, R) >consensus ACGCAUUCCUUCGACUUGCCGCCCUUCAUUUUCCAGCCAGCUGUUGGAAAAUCUGGCGCAAACCCCAG_U______AUACAUUAAU_____AUUUCAGAU_______________ ...........................((((((((((.....))))))))))............................................................... ( -6.80 = -7.17 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:20 2011