| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,525,388 – 17,525,478 |
| Length | 90 |
| Max. P | 0.974138 |
| Location | 17,525,388 – 17,525,478 |
|---|---|
| Length | 90 |
| Sequences | 11 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 77.72 |
| Shannon entropy | 0.46184 |
| G+C content | 0.60339 |
| Mean single sequence MFE | -37.36 |
| Consensus MFE | -23.53 |
| Energy contribution | -23.69 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.90 |
| SVM RNA-class probability | 0.974138 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17525388 90 + 21146708 CGAGGUGUACUUCGUGACGCAGGCGUAGCCAGCGGAGUUUGCCGCAGCGGGCGCUCCUGGAA---ACGGCGAGUGCCUGCUCGGCAUUUAGAU (((((....)))))...(((.(((...))).))).....(((((.((((((((((((((...---.))).))))))))))))))))....... ( -48.90, z-score = -4.11, R) >droPer1.super_2 5834146 81 - 9036312 CGAGGUUUAUUUUGUGACGCAGGCGUAGCCCGCGGAGUAUGCCGCAGUAGGCAU------------GUCCGAAUGUCUGCUCGGCCUCUAGAC .(((((........(((.((((((((......((((.((((((......)))))------------))))).))))))))))))))))..... ( -31.70, z-score = -1.91, R) >dp4.chr3 16769883 81 - 19779522 CGAGGUUUAUUUUGUGACGCAGGCGUAGCCCGCGGAGUAUGCCGCAGUAGGCAU------------GUCCGAAUGUCUGCUCGGCCUCUAGAC .(((((........(((.((((((((......((((.((((((......)))))------------))))).))))))))))))))))..... ( -31.70, z-score = -1.91, R) >droAna3.scaffold_13266 10922363 93 + 19884421 GGAGGUGUACUUUGUGACGCAGGCGUAGCCAGGGGAAUAUGCCGCAGCAGUGGCUCCAGACGCUGGAGGGGAGUGCCUGCUCGGCAUCUAGAC ..((((((......(((.(((((((...((..........(((((....)))))(((((...)))))..))..)))))))))))))))).... ( -33.40, z-score = 0.26, R) >droYak2.chr2R 9492286 90 - 21139217 CGAGGUUUACUUCGUGACGCAGGCGUAGCCAGCGGAGUUUGCCGCAGCAGGCGCUGCUGGGA---ACGGCGAGUGCCUGCUCGGCAUCUAGAU (((((....)))))...(((.(((...))).))).((..(((((.((((((((((((((...---.)))).))))))))))))))).)).... ( -48.30, z-score = -3.81, R) >droEre2.scaffold_4845 11673955 90 + 22589142 CGAGGUUUACUUCGUGACGCAGGCGUAGCCAGCGGAGUUUGCCGCAGCAGGGGCUCCUGGGA---ACGGAGAGUGCCUGCUCGGCAUCUAGAU (((((....)))))...(((.(((...))).))).((..(((((.((((((.(((((((...---.))).)))).))))))))))).)).... ( -44.70, z-score = -3.38, R) >droSec1.super_9 851451 90 + 3197100 CGAGGUGUACUUCGUGACGCAGGCGUAGCCAGCGGAGUUUGCCGCAGCAGGUGCUCCUGGGA---ACGGCGAGUGCCUGCUCGGCAUCUAGAU (((((....)))))...(((.(((...))).))).((..(((((.((((((..((((((...---.))).)))..))))))))))).)).... ( -46.10, z-score = -3.21, R) >droSim1.chr2R 16173863 90 + 19596830 CGAGGUGUACUUCGUGACGCAGGCGUAGCCAGCGGAGUUUGCCGCAGCAGGUGCUCCUGGGA---GCGGCGAGUGCCUGCUCGGCAUCUAGAU (((((....)))))...(((.(((...))).))).((..(((((.((((((..((((((...---.))).)))..))))))))))).)).... ( -45.10, z-score = -2.49, R) >droWil1.scaffold_180699 2500661 81 - 2593675 AGAGGUUUACUUUGUGACGCAGGCGUAGCCAGCGGAGUAUGCCGUGGCGGGCGC------------AAAUGAAUGUCUGCUCGGCCUUUAGAU ((((...((((((((.(((....))).....)))))))).((((.((((((((.------------.......)))))))))))))))).... ( -27.50, z-score = -0.33, R) >droVir3.scaffold_12875 3277469 84 + 20611582 CGAGAUGUACUUUGUGACGCAGGCGUAGCCAGCGCAGUUUGCCGACAUAACCGGCA---------AUUCCGAGUGCCUGCUCGGCAUGUAAAU ((((..((((((..((.(((.(((...))).)))))..((((((.......)))))---------)....))))))...)))).......... ( -27.30, z-score = -0.79, R) >droMoj3.scaffold_6496 4999929 84 - 26866924 GGAGAUGUACUUCGUGACGCAGGCGUAGCCAACGCAGUUCGCCGACAUUGCCGGCA---------ACUCCGAGUGCCUGCUCGGCAUGUAAAU ((((..(.(((.(((.(((....))).....))).))).)((((.......)))).---------.))))..(((((.....)))))...... ( -26.30, z-score = 0.19, R) >consensus CGAGGUGUACUUCGUGACGCAGGCGUAGCCAGCGGAGUUUGCCGCAGCAGGCGCUCC_G______ACGGCGAGUGCCUGCUCGGCAUCUAGAU ........(((((((.(((....))).....)))))))..((((.(((((((((..................)))))))))))))........ (-23.53 = -23.69 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:19 2011