| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,517,734 – 17,517,839 |
| Length | 105 |
| Max. P | 0.838400 |
| Location | 17,517,734 – 17,517,839 |
|---|---|
| Length | 105 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 79.83 |
| Shannon entropy | 0.41225 |
| G+C content | 0.58449 |
| Mean single sequence MFE | -37.77 |
| Consensus MFE | -23.33 |
| Energy contribution | -23.02 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.838400 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17517734 105 + 21146708 ---------UCAGCUACGCCGGCUAAGUCCC---GCCACGCAAGCAAGUCCAAAUCUUUCUCGCCAACAUGCACCCAACAGCUCAAUUGUUGGGGUGCGACGGCGGGCACGUAGACU ---------..((((.....))))..(((((---(((..((.((.(((.......))).)).)).....(((((((..((((......)))))))))))..)))))).))....... ( -36.90, z-score = -1.98, R) >droSim1.chr2R 16166074 105 + 19596830 ---------GCAGCUACGCCGGCUAAGUCCC---GCCAUGCAAGCAAGUCCAAAUCUUUCUCGCCAACAUGCACCCAACAGCUCAAUUGUUGGGGUGCGACGGCGGGCACGUAGACU ---------((((((.....))))..(((((---(((..((.((.(((.......))).)).)).....(((((((..((((......)))))))))))..)))))).))))..... ( -36.70, z-score = -1.41, R) >droSec1.super_9 843754 105 + 3197100 ---------GCAGCUACGCCGGCUAAGUCCC---GCCAUGCAAGCAAGUCCAAAUCUUUCUCGCCAACAUGCACCCAACAGCUCAAUUGUUGGGGUGCGACGGCGGGCACGUAGACU ---------((((((.....))))..(((((---(((..((.((.(((.......))).)).)).....(((((((..((((......)))))))))))..)))))).))))..... ( -36.70, z-score = -1.41, R) >droYak2.chr2R 9484922 105 - 21139217 ---------GCAGCUACGCCGGCUAAGUCCC---GCCAUGCACGCAAGUCCAAAUCUUUCUCGCCAACAUGCACCCAACAGCUCAAUUGUUGGGGUGCGACGGCGGGCACGUACACU ---------((((((.....))))..(((((---(((.((.((....)).)).................(((((((..((((......)))))))))))..)))))).))))..... ( -37.40, z-score = -1.79, R) >droEre2.scaffold_4845 11666582 105 + 22589142 ---------GCAGCUACGCCGGCUAAGUCCC---GCCAUGCACGCAAGUCCAAAUCUUUCUCGCCAACAUGCACCCAACAGCUCAAUUGUUGGGGUGCGACGGCGGGCACGUACACU ---------((((((.....))))..(((((---(((.((.((....)).)).................(((((((..((((......)))))))))))..)))))).))))..... ( -37.40, z-score = -1.79, R) >droAna3.scaffold_13266 10915292 105 + 19884421 ---------GCUACUCCGUCGACAGAGUCCU---GCCUUGCACGCCAGUCCGAAUAUAAUGCGCCAACAUGCACCCAACAGCUCAAUUGUUGGCGUGCGACGGCGGCCACGUACUCU ---------..............((((((((---((((((((((((.............((((......))))...(((((.....)))))))))))))).)))))....).))))) ( -31.40, z-score = -0.70, R) >dp4.chr3 16762527 108 - 19779522 ------CCCACGGCCACGCCGGGACAGUCCC---GCCUCGAACGCAAGUCCGAAUCUUUCUCGCCAGCAUGCACCCAACAGCUCAAUUGUUGGGGUGCGACGGCGAGCACGUACACU ------...(((.....(.((((.....)))---).)(((.((....)).)))......((((((....(((((((..((((......)))))))))))..))))))..)))..... ( -39.50, z-score = -1.64, R) >droPer1.super_2 5826727 108 - 9036312 ------CCCACGGCCACGCCGGGACAGUCCC---GCCUCGAACGCAAGUCCGAAUCUUUCUCGCCAGCAUGCACCCAACAGCUCAAUUGUUGGGGUGCGACGGCGAGCACGUACACU ------...(((.....(.((((.....)))---).)(((.((....)).)))......((((((....(((((((..((((......)))))))))))..))))))..)))..... ( -39.50, z-score = -1.64, R) >droWil1.scaffold_180699 2492488 113 - 2593675 GCUAUUGCUCUUGCUCGGCCAGCAGCCUCA----GCCUCGAAUGCAAGUCCAAAUCUUUCUCGCCAACAUGCAGCCAAUAGUUCAAUUGUUGGUGUGCGACGGCGGGCACGUACACU (((.(((..(((((..(((.....)))((.----.....))..)))))..)))........((((....(((((((((((((...))))))))).))))..)))))))......... ( -31.70, z-score = 0.35, R) >droVir3.scaffold_12875 3269469 108 + 20611582 ------UCGUCGUCCAAGUCGGCUAAGGCU---ACCGUCACAUGCCAAUUCAAAUCUGGCUCGCCAGCAUGCGCCCAACAGCUCAAUUGUUGGUGUGCGACGGCGAGCACGUACACU ------((((((((...((.(((...(((.---...)))....((((.........))))..))).))..(((((((((((.....))))))).))))))))))))........... ( -39.50, z-score = -2.30, R) >droMoj3.scaffold_6496 4992161 108 - 26866924 ------CCGUCGUCCAAGCCGGCUUAGGCA---AUCGUCACAUGCCAAUUCAAAUCUGGCUCGCCAGCAUGCACCCAACAGCUCAAUUGUUGGUGUGCGACGGCGAGCACGUACACU ------.(((((((...((.(((...(((.---...)))....((((.........))))..))).))..(((((((((((.....))))))).)))))))))))............ ( -40.30, z-score = -2.83, R) >droGri2.scaffold_15112 2294877 112 - 5172618 -----GCCGUCGUCCGAUUUGGCUGAGGCACACAGCGUCCCAUGCCAAUUCGAAUCUGGCUCGCCAGCAUGCGCCCAAUAACUCAAUUGUUGGUGUGCGACGGCGAGCACGUACACU -----((((((((((((.(((((.((.((.....)).))....))))).)))...((((....))))...(((((((((((.....))))))).))))))))))).))......... ( -46.30, z-score = -2.93, R) >consensus _________GCAGCUACGCCGGCUAAGUCCC___GCCUCGCACGCAAGUCCAAAUCUUUCUCGCCAACAUGCACCCAACAGCUCAAUUGUUGGGGUGCGACGGCGGGCACGUACACU ...........................................................((((((....((((((((((((.....))))))).)))))..)))))).......... (-23.33 = -23.02 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:18 2011