| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,511,912 – 17,512,067 |
| Length | 155 |
| Max. P | 0.942836 |
| Location | 17,511,912 – 17,512,067 |
|---|---|
| Length | 155 |
| Sequences | 5 |
| Columns | 156 |
| Reading direction | reverse |
| Mean pairwise identity | 82.57 |
| Shannon entropy | 0.30510 |
| G+C content | 0.46445 |
| Mean single sequence MFE | -50.42 |
| Consensus MFE | -41.30 |
| Energy contribution | -41.46 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.942836 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17511912 155 - 21146708 UUAUUUUAAAAGACACUUG-AAAAAUGCGGUUAAAUUAGGUACAACGUUGCCAGGUCUUGGUGCAGUUAGUCUGCGGCCUGGCAGCACGGUAAGCAAUGAAGGCAUUGCCGGAUCGAUUACAUACGCGGUCUGGUAGCCCUCCAUGCUUUAGCUCU .((((((..(((...))).-.)))))).(((((((.....(((...(((((((((((.....((((.....)))))))))))))))...))).(((..((.(((..((((((((((..........))))))))))))).))..)))))))))).. ( -52.10, z-score = -1.80, R) >droEre2.scaffold_4845 11660807 150 - 22589142 ----UUUAAAUUUAACUUG-AAAACUGCGGUUAAAUUAGGGUUAACGUUGCCAGGUCCAAUUCCAGUAAGUCUGUGGUCUGGCAGCAAUGUCA-UAAUGAAGGCAUUGCCGGAUCGAUUACAUACACGGUCUGGCAGCUCUCCAUGCUUCAGCUCU ----....(((((((((..-........)))))))))((((((...(((((((((.(((....(((.....)))))))))))))))((((((.-.......))))))(((((((((..........)))))))))(((.......)))..)))))) ( -47.90, z-score = -2.79, R) >droYak2.chr2R 9479189 150 + 21139217 ----UUUAAAUAUGAAUGG-AAAUUUGCGGCUUAAUUAGCGACAACGUUGCCAGUUCCAAUUGCAGUAAGUCUGCGAUCUGGCAACAAUGUUA-UAAUGCAGACAUUGCCGGAUCGAUUACAUACGCGGUCUGGCAGCUCCCCAUGCUUGAGCUCU ----(((((.((((...((-(..(((((((((.....)))((((..((((((((.....(((((((.....)))))))))))))))..)))).-...))))))..(((((((((((..........))))))))))).))).)))).))))).... ( -50.90, z-score = -3.11, R) >droSec1.super_9 837946 155 - 3197100 UUAUUUUAAUAGACACUUG-AAAAAUGCGGUUAAACUAGGGCCAACGUUGCCAGGUCUUGCUGCAGUAUGUCUGCGGCCUGGCAUCACGCUUGGUAAAGAAGGCAUUGCCGGAUUGAUUACAUACGCGGUCUGGCAGCCCUCCAUGCUUUAGCUCU ...................-........(((((((.(((((((((((((((((((((.....((((.....)))))))))))))..))).)))))......(((..((((((((((..........)))))))))))))..)).)).))))))).. ( -51.50, z-score = -1.22, R) >droSim1.chr2R 16160272 156 - 19596830 UUAUUUUAAUAGACACUUGAAAAAAUGCGGUUAAAUUAGGGCCAAUGUUGCCAGGUCUUGCUGCAGUAGGUCUGCGGCCUGGCAUCACGCUUGGCAAUGAAGGCAUUGCCGGAUCGAUUACAUACGCAGUCUGGCAGCCCUCCAUGCUUUAGCUCU ...........(.((.((....)).)))(((((((.(((((((((((((((((((((.....((((.....)))))))))))))..))).)))))......(((..((((((((((........))..)))))))))))..)).)).))))))).. ( -49.70, z-score = -0.40, R) >consensus UUAUUUUAAAAGACACUUG_AAAAAUGCGGUUAAAUUAGGGACAACGUUGCCAGGUCUUGCUGCAGUAAGUCUGCGGCCUGGCAGCACGGUUAGUAAUGAAGGCAUUGCCGGAUCGAUUACAUACGCGGUCUGGCAGCCCUCCAUGCUUUAGCUCU ............................(((((((...........(((((((((((.....((((.....)))))))))))))))..........(((.(((..(((((((((((..........))))))))))).))).)))..))))))).. (-41.30 = -41.46 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:17 2011