| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,498,563 – 17,498,672 |
| Length | 109 |
| Max. P | 0.937956 |
| Location | 17,498,563 – 17,498,672 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 80.45 |
| Shannon entropy | 0.32946 |
| G+C content | 0.38503 |
| Mean single sequence MFE | -30.10 |
| Consensus MFE | -16.26 |
| Energy contribution | -18.78 |
| Covariance contribution | 2.52 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.937956 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17498563 109 + 21146708 CGUUCUGGAAAAAA-UUAGCUGAAUGGAAUCGUUGUGCUAA-UUUCUGACAACAUUUGGAUUCAUCUAGAGUCUAGAUUCUAGACCAAAUGGUCAUGUG--AAAGCACAGAUG ...((((....(((-(((((..((((....))))..)))))-))).((((..(((((((.....((((((((....)))))))))))))))))))(((.--...))))))).. ( -32.00, z-score = -2.99, R) >droSim1.chr2R 16146953 112 + 19596830 CGGUCUGGAAAAAAAUUAGCUGAAUGGAAUCGUCGUGCUAA-UUUCUGACAACAUUUGGAUUCAUCUAGAGUCUUGAUUCUAGACCAAAUGGUCAUGUGUGAAAACACAGAUG .(((((((((..(((((((((((.((....))))).)))))-))).........((.((((((.....)))))).))))))))))).....(((.(((((....)))))))). ( -35.00, z-score = -3.78, R) >droSec1.super_9 824701 113 + 3197100 CGGUCUGGAAAAAAAUUAGCUGAAUGGAAUCGUCGUGACAACUUUCUGACAACAUUUGGAUUCAUCUAGAGUCUAGAUUCUAGUCCAAAUGGUCAUGUGUGAAAACACAGAUG .((.((((((.....................((((.((......))))))....(((((((((.....))))))))))))))).)).....(((.(((((....)))))))). ( -30.70, z-score = -2.07, R) >droYak2.chr2R 9465679 97 - 21139217 CGGUCUGGAAAAAAGUUAGCUGAAUGGAAUCGUUGUGCUAA-UUUUUGAUAACAUUU-------UUCAGAUUC----AUCUAGACCCAAUGGUCAUGUG----AAAACAGAUG .((((((((.((((((((((..((((....))))..)))))-)))))((........-------.))......----.)))))))).....(((.(((.----...)))))). ( -26.40, z-score = -2.70, R) >droEre2.scaffold_4845 11647388 94 + 22589142 CGGUCUGCAAAAAAGAUAGCUGAAUGGAAGCAUUGUGCUAA-UUUCUGCUAGCACUU----------GGAUUC----AUCUAGACCAAAUGGUCAUGUG----CAAACAGAUG ..(((((.........((((.(((....(((.....)))..-.))).))))((((.(----------(((...----.))))((((....))))..)))----)...))))). ( -26.40, z-score = -1.86, R) >consensus CGGUCUGGAAAAAAAUUAGCUGAAUGGAAUCGUUGUGCUAA_UUUCUGACAACAUUUGGAUUCAUCUAGAGUCU_GAUUCUAGACCAAAUGGUCAUGUG__AAAACACAGAUG ..(((((((((....(((((...(((....)))...))))).))))((((..(((((((.....((((((((....)))))))))))))))))))............))))). (-16.26 = -18.78 + 2.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:15 2011