| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,481,447 – 17,481,503 |
| Length | 56 |
| Max. P | 0.526776 |
| Location | 17,481,447 – 17,481,503 |
|---|---|
| Length | 56 |
| Sequences | 10 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 94.91 |
| Shannon entropy | 0.10410 |
| G+C content | 0.31224 |
| Mean single sequence MFE | -12.03 |
| Consensus MFE | -10.04 |
| Energy contribution | -10.00 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.526776 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17481447 56 - 21146708 AUAUGCAUGAUAUGUGUGCUACACCUUUUGUUAUGCAUUUGUUUUGAUGUCGAAAU ..((((((((((.(((.....)))....))))))))))..((((((....)))))) ( -13.70, z-score = -2.36, R) >droSec1.super_9 808321 56 - 3197100 AAAUGCAUGAUAUGUGUGCUACACCUUUUGUUAUGCAUUUGUUUUGAUGUCGAAAU ((((((((((((.(((.....)))....))))))))))))((((((....)))))) ( -15.90, z-score = -3.53, R) >droYak2.chr2R 9446628 56 + 21139217 AUAUGCAUGAUAUGUGUGCUACACCUUUUGUUAUGCAUUUGUUUUGAUGUCGAAAU ..((((((((((.(((.....)))....))))))))))..((((((....)))))) ( -13.70, z-score = -2.36, R) >droEre2.scaffold_4845 11626541 56 - 22589142 AUAUGCAUGAUAUGUGUGCUACACCUUUUGUUAUGCAUUUGUUGUGAUGUCGAAAU ..((((((((((.(((.....)))....)))))))))).................. ( -11.60, z-score = -0.88, R) >droAna3.scaffold_13266 5316887 56 - 19884421 AUAUGCAUGAUAUGUGUGCUACACCUUUUGUUAUGCAUUUGUUUUGAUGUCGAAAU ..((((((((((.(((.....)))....))))))))))..((((((....)))))) ( -13.70, z-score = -2.36, R) >dp4.chr3 15761383 56 - 19779522 AUAUGCAUGAUAUGUGUGUUACACCUUUUGUUAUGCAUUUGUUUUGAUGUUGAAAU ..((((((((((.(((.....)))....)))))))))).................. ( -11.60, z-score = -1.71, R) >droPer1.super_4 3872784 56 + 7162766 AUAUGCAUGAUAUGUGUGUUACACCUUUUGUUAUGCAUUUGUUUUGAUGUUGAAAU ..((((((((((.(((.....)))....)))))))))).................. ( -11.60, z-score = -1.71, R) >droGri2.scaffold_15245 13985071 54 - 18325388 AUAUGCAUGAUA--UGUGCUACACCUUUUGUUAUGCAGUUGUUUUGAUGUUGAAUC ...(((((((((--.(((...)))....)))))))))................... ( -9.30, z-score = -0.49, R) >droMoj3.scaffold_6496 15540788 54 + 26866924 AUAUGCAUGAUA--UGUGCUACACCUUUUGUUAUGCAUUUGUUUUGAUGUUGAAAU ..((((((((((--.(((...)))....)))))))))).................. ( -9.60, z-score = -0.95, R) >droVir3.scaffold_12875 2912116 54 + 20611582 AUAUGCAUGAUA--UGUGCUACACCUUUUGUUAUGCAUUUGUUUUGAUGUUGAAAU ..((((((((((--.(((...)))....)))))))))).................. ( -9.60, z-score = -0.95, R) >consensus AUAUGCAUGAUAUGUGUGCUACACCUUUUGUUAUGCAUUUGUUUUGAUGUCGAAAU ..((((((((((...(((...)))....))))))))))..((((((....)))))) (-10.04 = -10.00 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:12 2011