| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,431,822 – 17,431,878 |
| Length | 56 |
| Max. P | 0.892053 |
| Location | 17,431,822 – 17,431,878 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 65.51 |
| Shannon entropy | 0.62244 |
| G+C content | 0.39108 |
| Mean single sequence MFE | -10.57 |
| Consensus MFE | -6.90 |
| Energy contribution | -6.23 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.73 |
| Mean z-score | -0.67 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.892053 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17431822 56 + 21146708 AGUCCCAAGUCGAUGUAAUACGCUA-CAUAAGUACGUAU--------GUAUGUACUUGUGUAUUC .......................((-(((((((((((..--------..)))))))))))))... ( -14.60, z-score = -2.38, R) >droEre2.scaffold_4845 11576810 50 + 22589142 AAUUCCAAGUCGAGAUAAUGCGCU---GUAGGUACAU------------AUGUACUUGUGUGUUC ................(((((((.---..((((((..------------..))))))))))))). ( -9.10, z-score = -0.39, R) >droYak2.chr2R 9394216 54 - 21139217 AAUCCCAAG-----AUAAUGCGCUA-UGUAGGUACAUACAUG-----GUAUGUACUUGUGUGUUC .........-----.........((-..(((((((((((...-----)))))))))))..))... ( -13.70, z-score = -1.25, R) >droSec1.super_9 759689 52 + 3197100 AAUCCCAAGUCGAUGUAAUGCGCUA-UGUAAGUACGU------------AUGUACUUGUUUGUUC .....((((.(((.((((((((.((-(....))))))------------)).))))))))))... ( -8.10, z-score = -0.65, R) >droSim1.chr2R 16091122 64 + 19596830 AAUCCCAAGUCGAUGUAAUGCGCUA-UGUAAGUACGUAUGUACAUAUGUAUGUACUUGUUUGUUC .......((.((........)))).-..(((((((((((((....)))))))))))))....... ( -11.80, z-score = -0.47, R) >droGri2.scaffold_15245 13921206 57 + 18325388 ACUAACAACUGACUGUACUCCGUUUCUCUGAGUGUGUGU--------GUGUGUUUUGGCCCUAUU .((((..((..((..(((((.(.....).)))))...))--------..))...))))....... ( -6.10, z-score = 1.10, R) >consensus AAUCCCAAGUCGAUGUAAUGCGCUA_UGUAAGUACGUAU________GUAUGUACUUGUGUGUUC ............................(((((((((((........)))))))))))....... ( -6.90 = -6.23 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:08 2011