| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,428,071 – 17,428,202 |
| Length | 131 |
| Max. P | 0.984755 |
| Location | 17,428,071 – 17,428,202 |
|---|---|
| Length | 131 |
| Sequences | 5 |
| Columns | 142 |
| Reading direction | reverse |
| Mean pairwise identity | 67.78 |
| Shannon entropy | 0.55476 |
| G+C content | 0.42992 |
| Mean single sequence MFE | -34.86 |
| Consensus MFE | -14.81 |
| Energy contribution | -14.49 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.18 |
| SVM RNA-class probability | 0.984755 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17428071 131 - 21146708 GCUUGUUU------CUGAUACCUAGUUUUAUGCUCUCUUCUCUCCAACCGGCGAUAAGCCAAUUCAUAAAAAACGAA-ACCUCCCAGUGGCAAACUUUGUUCAAC-CAUCA---GUAUGUUUGUACAGCUGGGAUAUGAAAA ....((((------(.((.....(((.....)))....)).........(((.....)))..............)))-)).(((((((.((((((.(((......-...))---)...))))))...)))))))........ ( -27.60, z-score = -1.22, R) >droSim1.chr2R 16086414 113 - 19596830 ---------------------------GCUUGCUCUCUUCUCUCCGAGAGGCGAUAAGCCAAUUCAUAAAAAGCGAA-ACAUCCCAGUUGCGAACUUUAUUCAAC-CAUUAGCUGUAUGUUCAUACAGCUGGGGUAUGAAAA ---------------------------(((((.((.((((((...)))))).))))))).......((((...((.(-((......))).))...))))((((((-(.((((((((((....))))))))))))).)))).. ( -32.80, z-score = -2.91, R) >droSec1.super_9 754979 134 - 3197100 GCUUUAUU------CUGAUACCUAGUAGUAUUCUCUCUUCUCUUCGAGAGGAGAUAAGCCAAUUCAUAAAAAGGGAA-ACAUCCCAGUUGCGAACUUUAUUCAAC-CAUUAGCUGUAUGUUUAUACAGCUGGGGUAUGAAAA ((((....------..(((((......))))).(((((((((...))))))))).))))...(((.(((...((((.-...))))..))).))).....((((((-(.((((((((((....))))))))))))).)))).. ( -38.20, z-score = -3.07, R) >droYak2.chr2R 9389334 129 + 21139217 GCUUGUUU------CUGAUACCUAGAAAUACGCUCUUUACUCUCCGGCC--UUAUCG-CCAAUCCGUAAAUAGGAAACACAUCCCAGUUGCGUGAUGUGCUCAAC----CAUCAGUAUGCUCGCACUGCUGGGAUAUGGAAA ((.(((((------(((.....)))))))).))............(((.--.....)-))..((((((....(....)...(((((((.(.((((((((((....----....)))))).)))).).))))))))))))).. ( -40.90, z-score = -3.84, R) >droEre2.scaffold_4845 11572169 139 - 22589142 GCUUGUUUCCUAUACUCGUACCUAGUGAUACGCGCUCUUCCCUUCGGCC--UUAUCA-CAAAUCCACAAACAUCGAACAGCUCCCAGUUGCGAGCUUCGAACAGCUCAGCAUCAGUAUGCUUGCACUGCUGGAAUAUGAGAA ..............((((((....((((((.(.(((.........))))--.)))))-)...((((((....((((..(((((.(....).)))))))))...((..(((((....))))).))..)).)))).)))))).. ( -34.80, z-score = -1.43, R) >consensus GCUUGUUU______CUGAUACCUAGUAAUAUGCUCUCUUCUCUCCGACCGGCGAUAAGCCAAUUCAUAAAAAGCGAA_ACAUCCCAGUUGCGAACUUUGUUCAAC_CAUCAGCAGUAUGUUUGUACAGCUGGGAUAUGAAAA ..............................................................((((((.............((((((((((((((.......................)))))))..))))))))))))).. (-14.81 = -14.49 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:06 2011