| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,425,276 – 17,425,336 |
| Length | 60 |
| Max. P | 0.996939 |
| Location | 17,425,276 – 17,425,336 |
|---|---|
| Length | 60 |
| Sequences | 6 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 76.00 |
| Shannon entropy | 0.47424 |
| G+C content | 0.53056 |
| Mean single sequence MFE | -18.38 |
| Consensus MFE | -14.47 |
| Energy contribution | -15.08 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.01 |
| SVM RNA-class probability | 0.996939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17425276 60 + 21146708 UACAUACGUGGCGUGAUGAGCGAUCCUCCGCACUUCAUCAUCCCACGUUCGAUGAUUAUC ..(((((((((.((((((((((......)))...))))))).))))))...)))...... ( -21.40, z-score = -3.54, R) >droSim1.chr2R 16083498 60 + 19596830 UACAUACGUGGCGUGAUGAGCGAUCCUCCGCAUUUCAUCAUCCCGCGCUCGAUGAUUAUC ..(((.(((((.((((((((((......)))...))))))).)))))....)))...... ( -20.10, z-score = -2.36, R) >droSec1.super_9 752073 60 + 3197100 UACAUACGUGGCGUGAUGAGCGAUCCUCCGCAUUUCAUCAUCCCGCGCUCGAUGAUUAUC ..(((.(((((.((((((((((......)))...))))))).)))))....)))...... ( -20.10, z-score = -2.36, R) >droYak2.chr2R 9386578 60 - 21139217 UACAUACGUGGCGUGAUGAGUGACCCCCCGCACUUCAUCAUCCCGCGCUCGAUCACCAUC ......(((((.((((((((((........))).))))))).)))))............. ( -19.20, z-score = -3.09, R) >droEre2.scaffold_4845 11569388 60 + 22589142 UACAUACGUGGCGUGAUGAGCGACCCGCCGCACGUCAUCAUCCCGCCCUUGAUGAUGAUC .......((((((.(........).))))))..(((((((((........))))))))). ( -20.10, z-score = -2.21, R) >droAna3.scaffold_13266 7400004 60 - 19884421 UACUCACGAUUGUUAAUAAGCGUUCCACCGCAGACAAAUUCGCCAUUCCAGGAGAGGACG ..(((.((((((((.....(((......))).)))))..)))((......)).))).... ( -9.40, z-score = -0.36, R) >consensus UACAUACGUGGCGUGAUGAGCGAUCCUCCGCACUUCAUCAUCCCGCGCUCGAUGAUUAUC ..(((.(((((.((((((((((......)))...))))))).)))))....)))...... (-14.47 = -15.08 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:05 2011