| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,587,227 – 3,587,383 |
| Length | 156 |
| Max. P | 0.783056 |
| Location | 3,587,227 – 3,587,383 |
|---|---|
| Length | 156 |
| Sequences | 6 |
| Columns | 168 |
| Reading direction | reverse |
| Mean pairwise identity | 78.73 |
| Shannon entropy | 0.38404 |
| G+C content | 0.53537 |
| Mean single sequence MFE | -39.90 |
| Consensus MFE | -28.95 |
| Energy contribution | -29.40 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783056 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3587227 156 - 23011544 AACACGCUCCACACUUGAGUUCUGACGGACUCGAGUGCUUGGGGAAUGGACGAGACUCCA-CCUCAAG--AUUCAAGCCCCAAAACUCAAAA-CUCAAGACUCAAGACCACAGACCCC------CAGA-CCCCAGACCACAAGACACCC-AAAGCCCCGAGACAGGGA .....(((...(((((((((((....))))))))))).((((((..(((..(((......-.)))..(--(.((..................-.....)).))..............)------))..-))))))..............-..)))(((......))). ( -37.50, z-score = -0.90, R) >droSim1.chr2L 3544356 149 - 22036055 AACACGCUCCACACUUGAGUUCUGACGGACUCGAGUGCUUGGGGAAUGGACGAGACUCCA-CCUCAAG--AUCCCAGCCCCAAAACUCAAAA-CUCAAGACUCGAGACC--------------ACAGAUCCCCAGACCACAAGACACCC-AAAGCCCCGAGACAGGGA .....(((.....((((.(.((((..(((.((((((..((((((...(((.(((......-.)))...--.)))...)))))).))))....-(((.......)))...--------------...))))).)))).).))))......-..)))(((......))). ( -39.22, z-score = -1.19, R) >droSec1.super_5 1688173 149 - 5866729 AACACGCUCCACACUUGAGUUCUGACGGACUCGAGUGCUUGGGAAAUGGACGAGACUCCA-CCUCAAG--AUCCAAGCCCCAAAACUCAAAA-CUCAAGACUCGAGACC--------------ACAUACCCCCAGACCACAAGACACCC-AAAGCCCCGAGACAGGGA .....(((...(((((((((((....)))))))))))((((((...(((..(((......-.)))...--......................-(((.......)))...--------------........)))..)).))))......-..)))(((......))). ( -35.30, z-score = -1.22, R) >droYak2.chr2L 3578868 159 - 22324452 ---ACGCUCCACACUUGAGUUCUGAUGGACUCGAGUGCUUGGGGAAUGGACGCGACUCCA-CCUCAAG--AUCCAAGCCCCAAAACUGAAGA-CUCAAAACCCAAGACUCGAGACCACGGAGCACAGA-GCAAAGACCACAAGACACCC-AAAGCCCCGAGACAGGGA ---..((((......((.((((((.(((.(((((((.((((((((.((((......))))-..))...--................(((...-.)))...))))))))))))).))))))))).))))-))..................-.....(((......))). ( -47.90, z-score = -2.36, R) >droEre2.scaffold_4929 3626093 135 - 26641161 AACACGCUCCACACUUGAGUUCUGACGGACUCGAGUGCUUGGGGAAUGGACGCGACUCCA-CCUCAAG--AUCCAAGCCCCAAAACUCAAGA-CCC----------------------------CAGA-GCCCAGACCACAAGACACCCAAAAGCCCCGAGACAGGGA .....((((..(((((((((((....))))))))))).((((((..(((((..((.....-..))..)--.))))..)))))).........-...----------------------------..))-))........................(((......))). ( -40.40, z-score = -2.33, R) >droAna3.scaffold_12916 5637573 147 - 16180835 AACACACUCCACACUUCAGGGCUGAUGGGUUCGAGUGUUUGGGGAAUGGGCGAGUCUUGAGGCUCAAGAAACUCAAGAUCCAAGACUGAAAGUCUCAAAAACUAAAG----------------AAAAAACUGAAAACUGAAA---ACCC--AGGCCUCGAGACAGGGA .......(((((((((..(((((....)))))))))))((((((..((((.(..(((((((..........)))))))..).((((.....))))............----------------...................---.)))--)..))))))....))). ( -39.10, z-score = -0.12, R) >consensus AACACGCUCCACACUUGAGUUCUGACGGACUCGAGUGCUUGGGGAAUGGACGAGACUCCA_CCUCAAG__AUCCAAGCCCCAAAACUCAAAA_CUCAAGACUCAAGACC______________ACAGA_CCCCAGACCACAAGACACCC_AAAGCCCCGAGACAGGGA .....(((...(((((((((((....))))))))))).((((((..((((.(((........)))......))))..)))))).....................................................................)))(((......))). (-28.95 = -29.40 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:07 2011