| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,420,975 – 17,421,048 |
| Length | 73 |
| Max. P | 0.842346 |
| Location | 17,420,975 – 17,421,048 |
|---|---|
| Length | 73 |
| Sequences | 8 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 74.94 |
| Shannon entropy | 0.48844 |
| G+C content | 0.43892 |
| Mean single sequence MFE | -17.59 |
| Consensus MFE | -10.96 |
| Energy contribution | -10.02 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.842346 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17420975 73 + 21146708 UUUUUUCUGGCUUGUUUCAGUGUCGUGAGAACUUUUUCGCGUUUGGGCGCACAGCGUGUGAAUUGAAAGUUGG ......(..((((...(((((..(((((((....))))))).(((.((((...)))).))))))))))))..) ( -17.80, z-score = -0.20, R) >droSim1.chr2R 16078806 73 + 19596830 UUUUUUCUGGCCUGUUUCAGUGUCGUGAGAACUUUUUCGCGUUUGGGCGCACAGCGUGUGAAUUGAAAGUUGG ......(..((...(((((((..(((((((....))))))).(((.((((...)))).))))))))))))..) ( -17.10, z-score = 0.24, R) >droSec1.super_9 747667 73 + 3197100 UUUUUUAUGGCCUGUUUCAGUGUCGUGAGAACUUUGUCGCGUUUGGGCGCACAACGUGUGAAUUGAAAGUUGG ..((((((((((((...))).)))))))))((.((((.((((....)))))))).))................ ( -17.90, z-score = -0.33, R) >droYak2.chr2R 9382005 73 - 21139217 UUUUUUCUGGCUGGUUUCAGUGUCGUGAGAACUUUUUCGCGUUUGGGCGCACAGCGUGUGAAUUGAAAGUUGG ......(..(((...((((((..(((((((....))))))).(((.((((...)))).))))))))))))..) ( -17.80, z-score = -0.07, R) >droEre2.scaffold_4845 11564998 73 + 22589142 UUUUUUCUGGCUUUUUUCAGUGUCGUGAGAACUUUUUCGCGUUUGGGCGCACAGCGUGUGAAUUGAAAGUCGG ......((((((((((((((...(((((((....))))))).)))))(((((...)))))....))))))))) ( -20.00, z-score = -1.00, R) >dp4.chr3 15704757 58 + 19779522 GUUGUUGGUUUUUGUUUCAGUGUCGUGAGAA-UUUUUCGCGUUUGGAAUUGUAAGCCAG-------------- .....((((((..(((((((...(((((((.-..))))))).)))))))...)))))).-------------- ( -17.80, z-score = -4.66, R) >droPer1.super_4 3814376 58 - 7162766 GUUGUUGGUUUUUGUUUCAGUGUCGUGAGAA-UUUUUCGCGUUUGGAAUUGUAAGCCAG-------------- .....((((((..(((((((...(((((((.-..))))))).)))))))...)))))).-------------- ( -17.80, z-score = -4.66, R) >droWil1.scaffold_180569 1345997 72 + 1405142 UCUGUUUAUGUUUGCUUCAGUGUCGUGAGAA-UUUUUCGCGUUUGGGCGCACAUCGUGUGAAUUGAAUUGUGG ((.(((((..(.((((((((...(((((((.-..))))))).))))).)))....)..))))).))....... ( -14.50, z-score = 0.35, R) >consensus UUUUUUCUGGCUUGUUUCAGUGUCGUGAGAACUUUUUCGCGUUUGGGCGCACAGCGUGUGAAUUGAAAGUUGG ...............(((((...(((((((....))))))).)))))((((.....))))............. (-10.96 = -10.02 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:04 2011