| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,416,879 – 17,417,018 |
| Length | 139 |
| Max. P | 0.873460 |
| Location | 17,416,879 – 17,417,018 |
|---|---|
| Length | 139 |
| Sequences | 3 |
| Columns | 168 |
| Reading direction | forward |
| Mean pairwise identity | 69.11 |
| Shannon entropy | 0.43024 |
| G+C content | 0.36961 |
| Mean single sequence MFE | -41.00 |
| Consensus MFE | -21.73 |
| Energy contribution | -23.30 |
| Covariance contribution | 1.57 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.873460 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17416879 139 + 21146708 AGGGCCACACUGAAAACAA-----------AGGGUUAUCUCAA-AGAUUAGGCGAGCCAGUUAAAUGUACAUCGCAUU-----------------UCUUAAUGAGAUACUUUAUUCUCAUUGUUGCUAGCUGGUUAAGUAUAGUAUAUUUUUUUUACAGUGCUCAGAU .((((...((((((((.((-----------((((....)))..-..((((.((.((((((((((((((.....)))))-----------------...((((((((........))))))))....)))))))))..)).))))...))).)))).)))))))).... ( -32.40, z-score = -1.18, R) >droYak2.chr2R 9376353 165 - 21139217 AGGGCCACACUGAAAAGAACGAUUAUCUACAAGCUGAUAUCAGCAGAUUAGGCGAGCCAGUAAAAUGUACAUCACAUUAUUGAGGGCACUAAAGUUCUUAAUGAGAUAACGUGUUUUCAUUGUU--UUGCUGGCUA-GCUUAGCUAGUAUUUCUUACAGUGCUGAGAU .....(((((((..(((((.............((((....))))((.((((((.(((((((((((((.((((....(((((((((((......)))))))))))......))))......))))--))))))))).-)))))))).....))))).))))).)).... ( -50.10, z-score = -2.83, R) >droEre2.scaffold_4845 11560651 152 + 22589142 AGGGCCACACUGAAAAGAAAGACUAUCUACACGCUGAUGUAAUCAGAUUGGGCGAGCCAGUGAAAUGUACAUCACAUU-----------UGUAGUUUUUAAUGGGAUUUUUUAAUUUCAUUACUGCCAUCUAGUUA-----AGCUGGUAUUUUUUUCAGUGCUGAGAU .....((((((((((((((.......(((((...(((((((.....(((((.....)))))......)))))))....-----------)))))....(((((..(((....)))..))))).(((((.((.....-----)).))))))))))))))))).)).... ( -40.50, z-score = -1.96, R) >consensus AGGGCCACACUGAAAAGAA_GA_UAUCUACAAGCUGAUAUCAACAGAUUAGGCGAGCCAGUAAAAUGUACAUCACAUU___________U__AGUUCUUAAUGAGAUAAUUUAUUUUCAUUGUUGCUAGCUGGUUA_G__UAGCUAGUAUUUUUUACAGUGCUGAGAU .......(((((.((((((.............(((...(((....)))..))).((((((((((((((.....)))))....................((((((((........))))))))....)))))))))..............)))))).)))))....... (-21.73 = -23.30 + 1.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:03 2011