| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,409,822 – 17,409,932 |
| Length | 110 |
| Max. P | 0.529606 |
| Location | 17,409,822 – 17,409,932 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.95 |
| Shannon entropy | 0.32038 |
| G+C content | 0.46493 |
| Mean single sequence MFE | -29.16 |
| Consensus MFE | -16.01 |
| Energy contribution | -15.97 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.529606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17409822 110 + 21146708 GAGAGAGAGAGAGCGAAGUUCGAUUCGAACAUCGAGCGAAACGGGCAAAUCGGUUAA---------A-CGGUUCGGCCGAAGCUAUAUAAGCAACCCGCAAUAGCCACUCUGUAAAUUUG ...(.((((.(.((((.(((((...))))).))..(((...(((.(.(((((.....---------.-))))).).)))..(((.....)))....)))....))).)))).)....... ( -31.20, z-score = -1.65, R) >droEre2.scaffold_4845 11553611 96 + 22589142 --------------UCGGUUCGAUUCGAACAUCGAACGAAGCGGGCAAAUCGGUUAA---------AACGGUUCAACCGAAGCUAUAUAAGCAACCCGCAACAGCAAC-CCGUAAAUUUG --------------.(((((((.((((.....))))))))(((((....((((((.(---------(....)).)))))).(((.....)))..))))).........-)))........ ( -28.10, z-score = -2.83, R) >droYak2.chr2R 9368997 106 - 21139217 --------------CCGGUUCGAUUCGAGCAACGAGCGAAACGGGCCAAUCGGUUAAGACGGUUAAAACGGUUUGACGGAAGCUAUAUAAGGAACCCGCAACAGCCACUCUGUAAAUUUG --------------..((((((.((((..(...)..)))).))))))(((((.......))))).....((((((.(((...((......))...))))))..))).............. ( -24.20, z-score = 0.55, R) >droSec1.super_9 737944 103 + 3197100 --------GCGAGAGAAGUUCGUUUCGAACAUUGAGCGAAACGGGCAAAUCGGUAAA---------AACGGUUCGACCGAAGCUAUAUAAGCAACUCGCAACAGUCACUCUGUAAAUUUG --------(((((....((((((((((.........))))))))))...(((((..(---------(....))..))))).(((.....)))..))))).((((.....))))....... ( -31.40, z-score = -2.86, R) >droSim1.chr2R 16068633 103 + 19596830 --------GCGAGAGAAGUUCGUUUCGAACAUUGAGCGAAACGGGCAAAUCGGUAAA---------AACGGUUCAACCGAAGCUAUAUAAGCAACUCGCAACAGUCACUCUGUAAAUUUG --------(((((....((((((((((.........))))))))))...(((((...---------.........))))).(((.....)))..))))).((((.....))))....... ( -30.90, z-score = -3.19, R) >consensus ________G_GAG_GAAGUUCGAUUCGAACAUCGAGCGAAACGGGCAAAUCGGUUAA_________AACGGUUCGACCGAAGCUAUAUAAGCAACCCGCAACAGCCACUCUGUAAAUUUG ..................((((.((((.....)))))))).((((....((((((...................)))))).(((.....)))..))))..((((.....))))....... (-16.01 = -15.97 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:02 2011