| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,392,171 – 17,392,247 |
| Length | 76 |
| Max. P | 0.875273 |
| Location | 17,392,171 – 17,392,247 |
|---|---|
| Length | 76 |
| Sequences | 5 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 95.39 |
| Shannon entropy | 0.08159 |
| G+C content | 0.42105 |
| Mean single sequence MFE | -16.92 |
| Consensus MFE | -15.26 |
| Energy contribution | -15.62 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.875273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17392171 76 - 21146708 UCUGAACUCAAUCUACUGCUGAACUGUGUACUUGAUUGGGAUUCAAUGCUACUUCGGAUUUACCGACUCAGAAGAC (((((.(((((((...(((........)))...))))))).............((((.....)))).))))).... ( -18.50, z-score = -2.73, R) >droSim1.chr2R 16051617 76 - 19596830 UCUGAACUCAAUCUACUGCUGAACUGUGUACUUGAUUGGGAUUCAAUGCUACUUCGGAUUUACCGACUCAGAAGCC ..(((((((((((...(((........)))...))))))).))))..(((.((((((.....))))...)).))). ( -18.90, z-score = -2.71, R) >droSec1.super_9 721892 76 - 3197100 UCUGAACUCAAUCUACAGCUGAACUGUGUACUUGAUUGGGAUUCAAUGCUACUUCGGAUUUACCGACUCAGAAGUC (((((.((((((((((((.....))))).....))))))).............((((.....)))).))))).... ( -19.00, z-score = -1.94, R) >droYak2.chr2R 9351460 76 + 21139217 UCUGAACUCAAUCUACUGCUGAACUGUGUACUUGAUUGGGAUUGAAUGCUACUUUGGAUUUACCGACUCAAAAGCC ......(((((((...(((........)))...))))))).......(((..((((..((....))..))))))). ( -12.70, z-score = -1.33, R) >droEre2.scaffold_4845 11537204 76 - 22589142 UCUGAACUCAAUCUACUGCUGAGCUGUGUACUUGAUUGGGAUUCAAAGCUACUUUGGAUUUACCGACUCAAAAGCC ..(((((((((((...(((........)))...))))))).))))..(((..((((..((....))..))))))). ( -15.50, z-score = -1.07, R) >consensus UCUGAACUCAAUCUACUGCUGAACUGUGUACUUGAUUGGGAUUCAAUGCUACUUCGGAUUUACCGACUCAGAAGCC (((((.(((((((...(((........)))...))))))).............((((.....)))).))))).... (-15.26 = -15.62 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:01 2011