| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,380,977 – 17,381,088 |
| Length | 111 |
| Max. P | 0.568365 |
| Location | 17,380,977 – 17,381,088 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 66.63 |
| Shannon entropy | 0.60283 |
| G+C content | 0.45327 |
| Mean single sequence MFE | -28.08 |
| Consensus MFE | -11.52 |
| Energy contribution | -12.50 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568365 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17380977 111 + 21146708 AAGGCGGAGACUGUUUGGCCAAAAGCCGAAGCCGAAAAUGGCAGAAGGAGCUGUGUUCGCAGCUUGAGGCUGAAAAGCAAGAAGUGGCUG-AAAAGGAUUUCUCGCACAAGG ...(((((((((.((..((((..((((...(((......))).....(((((((....)))))))..)))).............))))..-))..)).)))).)))...... ( -36.76, z-score = -1.29, R) >droSim1.chr2R 16040535 105 + 19596830 AAGGAGUAGACUGUUUGGCCUAAA------GCCGAAAAUGGCAGAAGGAGCUGUGUUCGCAGCUUGAGGCUGAAAAGCAAGAAGUGGCUG-AAAAGGAUUUUUCGCACAAGG ..((((.(..((.((..(((....------(((......))).....(((((((....)))))))...(((....))).......)))..-)).))..).))))........ ( -30.90, z-score = -0.96, R) >droSec1.super_9 710776 104 + 3197100 AAGGAGUAGACUGUUUGGCCUAA-------GCCGAAAAUGGCAGAAGGAGCUGUGUUCGCAGCUUGAGGCUGAAAAGCAAGAAGUGCCUG-AAAAGGAUUUUUCGCACAAGG .............((..((((..-------(((......))).....(((((((....))))))).))))..))..((.((((((.(((.-...))))))))).))...... ( -34.00, z-score = -1.81, R) >droYak2.chr2R 9340169 90 - 21139217 ---AAGGAGACUGUUUGGCCUAAA-----ACCCAAAAGUGGCAGCAGGAGCUG--UUCGCAGCUUGAGGC--------AAGAAAUGGCUGGAAAAGGAUUUUUAGCAG---- ---.((....)).....((((...-----..(((....)))......((((((--....)))))).))))--------........((((((((....))))))))..---- ( -24.40, z-score = 0.11, R) >droEre2.scaffold_4845 11525804 88 + 22589142 ---AAGGAGACUGUUUGGCCUAAA------GCCGAAAAUGGCAGAAGGAGCUG--UUCGCAGCUUGAGGCC--------AGAAGUGGCUG-AAAAGGAUUUUUAGAAC---- ---.((....)).((((((((...------(((......))).....((((((--....)))))).)))))--------))).....(((-(((.....))))))...---- ( -29.70, z-score = -2.73, R) >droWil1.scaffold_180697 1704376 102 + 4168966 GAAACAUAACAAAAACAACCUACAA---AAGCUAAAAUCUUUCAACUUAAGUAUCUUUCGCUCCAGGGGCAAAAAAA-AAAAAAAACUUGUGAAAAGAUUUUGCAU------ .........................---..((.(((((((((((((....)).......(((.....))).......-............)).)))))))))))..------ ( -12.70, z-score = -0.97, R) >consensus AAGAAGGAGACUGUUUGGCCUAAA______GCCGAAAAUGGCAGAAGGAGCUGUGUUCGCAGCUUGAGGCUGAAAAG_AAGAAGUGGCUG_AAAAGGAUUUUUCGCAC____ ................(((((.........(((......))).....((((((......)))))).)))))......................................... (-11.52 = -12.50 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:00 2011