| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,366,820 – 17,366,875 |
| Length | 55 |
| Max. P | 0.553061 |
| Location | 17,366,820 – 17,366,875 |
|---|---|
| Length | 55 |
| Sequences | 10 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 86.38 |
| Shannon entropy | 0.27713 |
| G+C content | 0.36631 |
| Mean single sequence MFE | -7.19 |
| Consensus MFE | -7.17 |
| Energy contribution | -7.38 |
| Covariance contribution | 0.21 |
| Combinations/Pair | 1.09 |
| Mean z-score | -0.38 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.553061 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 17366820 55 + 21146708 UCACUGCCAUAUUUAUGCGUUC--GCAAUGCAGACGUUUUUAAUGUCUUUUCUACAA ...............(((((..--...)))))(((((.....))))).......... ( -7.10, z-score = -0.36, R) >droEre2.scaffold_4845 11511518 55 + 22589142 UCACUGCCAUAUUUAUGCGUUC--GCAAUGCAGACGUUUUUAAUGUCUUUUCUACAA ...............(((((..--...)))))(((((.....))))).......... ( -7.10, z-score = -0.36, R) >droYak2.chr2R 9325762 55 - 21139217 UCACCGCCAUAUUUAUGCGUUC--GCAAUGCAGACGUUUUUAAUGUCUUUUCUACAA ...............(((((..--...)))))(((((.....))))).......... ( -7.10, z-score = -0.55, R) >droSec1.super_9 696789 55 + 3197100 UCACUGCCAUAUUUAUGCGUUC--GCAAUGCAGACGUUUUUAAUGUCUUUUCUACAA ...............(((((..--...)))))(((((.....))))).......... ( -7.10, z-score = -0.36, R) >droSim1.chr2R 16025623 55 + 19596830 UCACUGCCAUAUUUAUGCGUUC--GCAAUGCAGACGUUUUUAAUGUCUUUUCUACAA ...............(((((..--...)))))(((((.....))))).......... ( -7.10, z-score = -0.36, R) >droAna3.scaffold_13266 5196173 55 + 19884421 UUGUUGCCAUAUUUAUGCGUUC--GCAAUGCAGACGGUUUUAAUGUCUUUUCUACAA ...............(((((..--...)))))((((.......)))).......... ( -6.00, z-score = 0.95, R) >dp4.chr3 15647182 51 + 19779522 UUCUACCCAUAUUUAUGCGUUC--GCAAUGCAGACGUUUUUAAUGUCUACUCU---- ................((((..--...))))((((((.....)))))).....---- ( -7.30, z-score = -1.59, R) >droPer1.super_4 3759544 51 - 7162766 UUCUACACAUAUUUAUGCGUUC--GCAAUGCAGACGUUUUUAAUGUCUUCUCU---- ...............(((((..--...)))))(((((.....)))))......---- ( -7.10, z-score = -1.17, R) >droWil1.scaffold_180697 1681869 55 + 4168966 UUGUUGCCAUAUUUAUGCGUUC--GCAAUGCAGACAUUUUUAAUGUCUUCUCUUCAA ...............(((((..--...)))))(((((.....))))).......... ( -7.50, z-score = -0.63, R) >droMoj3.scaffold_6496 15397656 51 - 26866924 UUGUUGCCAUAUUUAUGCGAUGCAGCAGUGCAGACGCUUUUAAUGUCUUUU------ ........(((((...(((.((((....))))..)))....))))).....------ ( -8.50, z-score = 0.66, R) >consensus UCACUGCCAUAUUUAUGCGUUC__GCAAUGCAGACGUUUUUAAUGUCUUUUCUACAA ...............((((((.....))))))(((((.....))))).......... ( -7.17 = -7.38 + 0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:57 2011