| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,355,247 – 17,355,301 |
| Length | 54 |
| Max. P | 0.988775 |
| Location | 17,355,247 – 17,355,301 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 96.30 |
| Shannon entropy | 0.05102 |
| G+C content | 0.33333 |
| Mean single sequence MFE | -5.07 |
| Consensus MFE | -5.07 |
| Energy contribution | -5.07 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.32 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.34 |
| SVM RNA-class probability | 0.988775 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17355247 54 - 21146708 AGUUCCAAUUCCGAAUCUAAGUGUACAUACGCUACCCAUUCUAUAAAUCCAAAA ............((((...(((((....)))))....))))............. ( -4.90, z-score = -2.33, R) >droSim1.chr2R_random 2702932 54 - 2996586 AGUUUCAAUUCCGAAUCUAAGUGUACAUACGCUACCCAUUCUAUAAAUCCAAAA ............((((...(((((....)))))....))))............. ( -4.90, z-score = -2.10, R) >droSec1.super_9 685467 54 - 3197100 AGUUUAAAUUCCGAAUCUAAGUGUACAUACGCUACCCAUUCAAUAAAUCCAAAA ............((((...(((((....)))))....))))............. ( -5.40, z-score = -2.52, R) >consensus AGUUUCAAUUCCGAAUCUAAGUGUACAUACGCUACCCAUUCUAUAAAUCCAAAA ............((((...(((((....)))))....))))............. ( -5.07 = -5.07 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:55 2011