| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,582,713 – 3,582,798 |
| Length | 85 |
| Max. P | 0.781887 |
| Location | 3,582,713 – 3,582,798 |
|---|---|
| Length | 85 |
| Sequences | 9 |
| Columns | 89 |
| Reading direction | reverse |
| Mean pairwise identity | 87.35 |
| Shannon entropy | 0.26871 |
| G+C content | 0.38186 |
| Mean single sequence MFE | -18.96 |
| Consensus MFE | -13.32 |
| Energy contribution | -13.99 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.781887 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3582713 85 - 23011544 UGCAGCUAGCUU-AAGCCUGUGCGAUCUUUAUGUAAACUGGUACUUGAAAUUUGAAAUCAUGUACCAUUUGCCUU--GAGACUGACAA- .(((.(..((..-..))..))))..((((...(((((.((((((.(((.........))).)))))))))))...--)))).......- ( -19.90, z-score = -1.94, R) >droSim1.chr2L 3539133 85 - 22036055 UGCAGCUAGCUA-AAGCCUGUGCGAUCUUUAUGUAAACUGGUACUUGAAAUUUGAAAUCAUGUACCAUUUGCCUU--GAGACUGACAA- .(((.(..((..-..))..))))..((((...(((((.((((((.(((.........))).)))))))))))...--)))).......- ( -19.90, z-score = -2.02, R) >droSec1.super_5 1683655 85 - 5866729 UGCAGCUAGCUA-AAGCCUGUGCGAUAUUUAUGUAAACUGGUACUUGAAAUUUGAAAUCAUGUACCAUUUGCCUU--GAGACUGACAA- .(((.(..((..-..))..))))....((((.(((((.((((((.(((.........))).)))))))))))..)--)))........- ( -17.20, z-score = -1.12, R) >droYak2.chr2L 3574195 85 - 22324452 UGCAGCUAGCUU-AAGCCUGUGCGAUCUUUAUGUAAACUGGUACUUGAAAUUUGAAAUCAUGUACCAUUUGCCUU--GAGACUGACAA- .(((.(..((..-..))..))))..((((...(((((.((((((.(((.........))).)))))))))))...--)))).......- ( -19.90, z-score = -1.94, R) >droEre2.scaffold_4929 3621733 85 - 26641161 UGCAGCUAGCUU-GAGCCUGUGCGAUCUUUAUGUAAACUGGUACUUGAAAUUUGAAAUCAUGUACCAUUUGCCUU--GAGACUGACAA- .(((.(..((..-..))..))))..((((...(((((.((((((.(((.........))).)))))))))))...--)))).......- ( -19.90, z-score = -1.81, R) >droAna3.scaffold_12916 5632540 87 - 16180835 UGCAACUAGCUUAAAGCCUGUGCGAUCUUUAUGUAAACUGGUACUUGAAAUUUGAAAUCAUGUACCAUUUGCCUU--GAGACAGACAGA .((.....)).......((((.(..((((...(((((.((((((.(((.........))).)))))))))))...--))))..))))). ( -20.90, z-score = -2.29, R) >dp4.chr4_group3 6529982 88 + 11692001 UGAAGCUAGCCUUAGCCCUGUGCGAUCUUUAUGUAAACUGGUACUUGAAAUUUGAAAUCAUGUACCAUUUGCCUUGAGAGACAGACAA- ....((((....)))).((((....((((...(((((.((((((.(((.........))).)))))))))))...)))).))))....- ( -21.00, z-score = -2.49, R) >droPer1.super_1 3629589 69 + 10282868 -------------------GUGCGAUCUUUAUGUAAACUGGUACUUGAAAUUUGAAAUCAUGUACCAUUUGCCUUGAGAGACAGACAA- -------------------((.(..(((((..(((((.((((((.(((.........))).)))))))))))....)))))..)))..- ( -16.50, z-score = -2.55, R) >droWil1.scaffold_180708 2971881 73 + 12563649 UGUAGCUAGCCU-------------UCUUUAUGUAAACUGGUACUUGAAAUUUGAAAUCAUGUACCAUUUGCCUU--GAGACAGAUCA- ..........((-------------((((...(((((.((((((.(((.........))).)))))))))))...--)))).))....- ( -15.40, z-score = -1.68, R) >consensus UGCAGCUAGCUU_AAGCCUGUGCGAUCUUUAUGUAAACUGGUACUUGAAAUUUGAAAUCAUGUACCAUUUGCCUU__GAGACUGACAA_ ..................(((.(..((((...(((((.((((((.(((.........))).))))))))))).....))))..)))).. (-13.32 = -13.99 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:06 2011