| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,354,591 – 17,354,702 |
| Length | 111 |
| Max. P | 0.726616 |
| Location | 17,354,591 – 17,354,702 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 91.35 |
| Shannon entropy | 0.14894 |
| G+C content | 0.50890 |
| Mean single sequence MFE | -24.46 |
| Consensus MFE | -22.06 |
| Energy contribution | -20.98 |
| Covariance contribution | -1.08 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.726616 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17354591 111 + 21146708 AAAUUAACUAUCGCCCUACGUCCUUUACCCUCUUUUCCGUAUCCUUUCGGACUUUUCAUUUCGCAUCGACUUGUGGCAUGUGGGCUAGCAGUCUGCUGCCGAUUUCUCCCU-- .........(((((((.((((((............((((........))))...........(((......))))).))))))))..((((....)))).)))........-- ( -24.20, z-score = -2.00, R) >droEre2.scaffold_4845 11499336 111 + 22589142 GAAUUAACUAUCGCCCUCCGCACUUUACCCUCUUUUCCGGAUCCUUUCGGACUUUUCAUUUCGUUCCGACUUGUGGCAUGUGGGCCAGCAGUCUGCUGUCAAUUUCCCCCU-- ............((((.(((((.............((((((....)))))).........(((...)))..))))).....))))((((.....)))).............-- ( -23.30, z-score = -0.94, R) >droYak2.chr2R 9313787 111 - 21139217 GAAUUAACUAUCGCCCUCCGCCCUUUACCCUCUUUUCCGGAACCUUUCGGACUUUUCAUUUCGUUCCGACUUGCGGCAUGUGGGCCAGCAGUCUGCUGUCAAUUUCCCCCU-- ............((((.(.(((.............((((((....)))))).....((..(((...)))..)).)))..).))))((((.....)))).............-- ( -23.20, z-score = -0.72, R) >droSec1.super_9 684831 113 + 3197100 GAAUUAACUAUCGCCCUACGUCCUUUACCCUCUUUUCCGGAUCCUUUUGGACUUUUCAUUUCGCUCCGACUUGUGGCAUGUGGGCUAGCAGCCUGCUGCCAAUUCCCCCCCCU (((((.......((((.((((((............((((((....)))))).....((..(((...)))..)).)).))))))))..((((....)))).)))))........ ( -25.80, z-score = -1.79, R) >droSim1.chr2R 16013064 112 + 19596830 GAAUUAACUAUCGCCCUACGUCCUUUACCCUCUUUUCCGGAUCCUUUCGGACUUUUCAUUUCGCUCCGACUUGUGGCAUGUGGGCUAGCAGCCUGCUGCCAAUUUCCCCCCU- ............((((.((((((............((((((....)))))).....((..(((...)))..)).)).))))))))..((((....)))).............- ( -25.80, z-score = -1.75, R) >consensus GAAUUAACUAUCGCCCUACGUCCUUUACCCUCUUUUCCGGAUCCUUUCGGACUUUUCAUUUCGCUCCGACUUGUGGCAUGUGGGCUAGCAGUCUGCUGCCAAUUUCCCCCU__ (((((.......((((...................((((((....)))))).....(((.((((........)))).))).))))..((((....)))).)))))........ (-22.06 = -20.98 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:55 2011