| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,354,158 – 17,354,230 |
| Length | 72 |
| Max. P | 0.545128 |
| Location | 17,354,158 – 17,354,230 |
|---|---|
| Length | 72 |
| Sequences | 4 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 92.34 |
| Shannon entropy | 0.11991 |
| G+C content | 0.64437 |
| Mean single sequence MFE | -27.36 |
| Consensus MFE | -23.09 |
| Energy contribution | -23.16 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.545128 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17354158 72 + 21146708 UCCAGGGAACACCCGGCGCGGGCGGAUCAUGCAGGCCACGAGCAGACGUGGCCAGAAUCAACGUCC----ACAUGC .((.(((....))))).(.(((((.......(.(((((((......))))))).)......)))))----.).... ( -26.82, z-score = -1.43, R) >droSim1.chr2R 16012625 72 + 19596830 UCCAGGGAACACCCGGCGCGGGCGGAUCAGGCAGGCCACGAGCAGACGUGGCCAGAAUCAACGUCC----ACAUGC .((.(((....))))).(.(((((.......(.(((((((......))))))).)......)))))----.).... ( -26.82, z-score = -1.45, R) >droYak2.chr2R 9313316 76 - 21139217 UCCAGGGAAAACCCGGCGAGUGCGGAUCAGGCAGGCCAUGAGCAGACGUGGCCAAAAUCAACGUCCGUCCACAUGC ....(((....))).(((.((((((((......(((((((......))))))).........)))))..))).))) ( -24.16, z-score = -0.73, R) >droEre2.scaffold_4845 11498861 72 + 22589142 UCCAGGGAACACCCGGCGAGGGCGGAUCAGGCUGGCCACGAGCAGACGUGGCCAGAAUCAACGUCC----ACAUGC .((.(((....)))))...(((((.......(((((((((......)))))))))......)))))----...... ( -31.62, z-score = -2.96, R) >consensus UCCAGGGAACACCCGGCGAGGGCGGAUCAGGCAGGCCACGAGCAGACGUGGCCAGAAUCAACGUCC____ACAUGC .((.(((....)))))...(((((.........(((((((......)))))))........))))).......... (-23.09 = -23.16 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:54 2011