| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,350,463 – 17,350,564 |
| Length | 101 |
| Max. P | 0.631350 |
| Location | 17,350,463 – 17,350,564 |
|---|---|
| Length | 101 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 59.27 |
| Shannon entropy | 0.75000 |
| G+C content | 0.47622 |
| Mean single sequence MFE | -22.67 |
| Consensus MFE | -5.12 |
| Energy contribution | -5.29 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.23 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.631350 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17350463 101 - 21146708 -UUUCAUCCUCUCCCCUGCUUUUAUCUUAUUUUUUUUUCAUACUUUUCGGCUCCUCUUGGCCAUGAAAAAGCGCACAACU-UUAAGCACAAGAGACGGUCAAA -......((((((...(((((...........(((((((((.......((((......))))))))))))).........-..)))))...)))).))..... ( -19.06, z-score = -2.05, R) >droEre2.scaffold_4845 11495217 84 - 22589142 -----------GCCCCCACUUUUUCGCUAUAUUUGUU----GCUUUAUGGCUCCUCUUGGCCAUGAAAAAG--UACAACU-UUAAGCACAAGAGACGGGACA- -----------...(((.(((((..(((....((((.----(((((((((((......))))))))...))--)))))..-...)))..)))))..)))...- ( -21.20, z-score = -1.85, R) >droYak2.chr2R 9305064 99 + 21139217 AUUCCAACGUGUCUCCUACUAUUCCCAUAUUUUUUGUUGCUGCUUUAUGACUCCUCUUGGCCAUGAAAAG---CACAACU-CUGAGCACAAGAGACGGGGCAA .........((((((..................((((.(((..((((((...((....)).)))))).))---)))))((-((.......))))..)))))). ( -20.90, z-score = -0.39, R) >droSec1.super_9 680672 90 - 3197100 -UUUCAUCGUCUCCCCUGCUUUUGCCUUAUUUUUUAU-----------GGCUCCUCUUGGCCAUGAAAAAGCGCACCACU-UUAAGCACAAGAGACGGUCCAA -....((((((((...(((((.(((....((((((((-----------((((......))))))))))))..))).....-..)))))...)))))))).... ( -29.50, z-score = -4.88, R) >droSim1.chr2R 16008939 90 - 19596830 -UUUCAUCGUCUCCCCUGCUUUUGCCUUAUUUUUUAU-----------GGCUCCUCUUGGCCAUGAAAAAGCGCACAACU-UUAAGCACAAGAGACGGUCCAA -....((((((((...(((((.(((....((((((((-----------((((......))))))))))))..))).....-..)))))...)))))))).... ( -29.50, z-score = -4.81, R) >dp4.chr3 15630613 89 - 19779522 -------------UCCCAUCGCCCCACCCCCCUCUUGCGAUGCGCUGCGGCUCUUAGUGGCCCUGAAAAAGCUUAGCUCUGCCUAGCCCAGGAAAUAUGAAA- -------------...((((((..............))))))..(((.((((....(..(..((((......))))..)..)..)))))))...........- ( -19.24, z-score = 0.42, R) >droPer1.super_4 3743276 88 + 7162766 -------------UCCCAUCGCCCCA-CCCCCUCCUGCGAUGCGCUGCGGCUCUUAGUGGCCCUGAAAAAGCUUAGCUCUGCCUAGCCCAGGAAAUAUGAAA- -------------...((((((....-.........))))))..(((.((((....(..(..((((......))))..)..)..)))))))...........- ( -19.32, z-score = 0.31, R) >consensus _UU_CA_C_U_UCCCCUACUUUUCCCUUAUUUUUUUU___UGCUUU_CGGCUCCUCUUGGCCAUGAAAAAGCGCACAACU_UUAAGCACAAGAGACGGGACAA .....................................................((((((((........................)).))))))......... ( -5.12 = -5.29 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:53 2011