| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,347,407 – 17,347,516 |
| Length | 109 |
| Max. P | 0.605591 |
| Location | 17,347,407 – 17,347,516 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 86.57 |
| Shannon entropy | 0.21420 |
| G+C content | 0.31080 |
| Mean single sequence MFE | -20.66 |
| Consensus MFE | -12.38 |
| Energy contribution | -12.38 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.605591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17347407 109 - 21146708 UUAAGAACCAAUGAUUCUUACAUACAUAGAUUUUACUUUUUUUCAAUUUUCAAUUUUUUCCCUUUGAGAAAACCUACACUUGCGCUUACGAGUGUGAGAUGAAAUUCUA .((((((.......))))))......((((((((((((((((((((.................)))))))))..((((((((......)))))))))).))))).)))) ( -17.53, z-score = -2.13, R) >droYak2.chr2R 9302039 97 + 21139217 UUGGGCAAAAAGGAU-----CAUACAUAGAUUUUUCUUUUUG----AUUUCAAUUUUUU-CUUUUGAGAAAACC--CACUUGCGCUUACAAGUGUGAGAUGAAAUUCUA .(((((((((((((.-----.((......))..)))))))))----.......((((((-(....)))))))))--))((..((((....))))..))........... ( -23.70, z-score = -2.57, R) >droSec1.super_9 677661 101 - 3197100 -UAAGAAGCGAUGAUUCUUACAUACAUAGAUUUUGCUUUUUU----AUUUCAAUUUUUU-CCUUUGAGAAAACC--CACUUGCGCUUACGUGUGUGAGAUGAAAUUCUA -.(((((((((....(((.........)))..))))))))).----((((((.((((((-(....)))))))..--..((..(((......)))..)).)))))).... ( -21.40, z-score = -2.70, R) >droSim1.chr2R 16006022 102 - 19596830 UUAAGAAGCGAUGAUUCUUACAUACAUAGAUUUUCCUUUUUG----AUUUCAAUUUUUU-CCUUUGAGAAAACC--CACUUGCGCUUACGAGUGUGAGAUGAAAUUCUA ((((((((.((....(((.........)))...)))))))))----)(((((.((((((-(....)))))))..--..((..((((....))))..)).)))))..... ( -20.00, z-score = -2.16, R) >consensus UUAAGAAGCAAUGAUUCUUACAUACAUAGAUUUUACUUUUUG____AUUUCAAUUUUUU_CCUUUGAGAAAACC__CACUUGCGCUUACGAGUGUGAGAUGAAAUUCUA ..........................((((.(((.............((((((..........)))))).......((((..(((......)))..)).))))).)))) (-12.38 = -12.38 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:52 2011