| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,345,603 – 17,345,659 |
| Length | 56 |
| Max. P | 0.731598 |
| Location | 17,345,603 – 17,345,659 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 62.40 |
| Shannon entropy | 0.63656 |
| G+C content | 0.53907 |
| Mean single sequence MFE | -10.45 |
| Consensus MFE | -4.18 |
| Energy contribution | -4.93 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.731598 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17345603 56 - 21146708 CAGCAGGUGAUCUCCUCACCUGACCUUCCU---GCCACUUCACCCA-CGCCAUCGUUAUU--- ...(((((((.....)))))))........---.............-.............--- ( -10.20, z-score = -1.94, R) >droSec1.super_9 675904 56 - 3197100 CAGUAGGUGAUCUCCUCACCUGACCUUCCU---GCCAUUUCACCCA-CGCCACCGUUAUU--- ...(((((((.....)))))))........---.............-.............--- ( -8.30, z-score = -1.23, R) >droYak2.chr2R 9300086 60 + 21139217 CAGCAGGUGAUCACAUCACCUGACCUUCCU---GCAAUUUCACCUACCGCCUUCACCUUUGUU ...((((((((...))))))))........---.............................. ( -10.40, z-score = -1.89, R) >droEre2.scaffold_4845 11490416 56 - 22589142 CAGCAGGUGAUCACUUCACCUGACCUUCCU---GCGAUGUCACCCA-CUCCACCUUUAUU--- ...(((((((.....)))))))........---.............-.............--- ( -11.00, z-score = -2.06, R) >dp4.chr3 15624714 55 - 19779522 UGGAGGACAGUCACUAAGCCUAACCUCUCUCUGGUGAUUUGCUCC--CUCCCCCACC------ .(((((.(((((((((...............)))))).)))...)--))))......------ ( -12.86, z-score = -0.61, R) >droPer1.super_4 3737541 55 + 7162766 UGGAGCACAGUCACUAAGCCUAACCUCUCUCUGGUGAUUUGAUCC--CCCCCCCACC------ .(((.((.((((((((...............)))))))))).)))--..........------ ( -9.96, z-score = -0.50, R) >consensus CAGCAGGUGAUCACUUCACCUGACCUUCCU___GCGAUUUCACCCA_CGCCACCACCAUU___ ...(((((((.....)))))))......................................... ( -4.18 = -4.93 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:51 2011