| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,340,979 – 17,341,084 |
| Length | 105 |
| Max. P | 0.943519 |
| Location | 17,340,979 – 17,341,084 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 92.32 |
| Shannon entropy | 0.15009 |
| G+C content | 0.39880 |
| Mean single sequence MFE | -27.95 |
| Consensus MFE | -24.34 |
| Energy contribution | -24.25 |
| Covariance contribution | -0.09 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.943519 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17340979 105 - 21146708 GUGUCUGUGUGGUUGAACGACGCCAUCAACAGCUUAGAAUUUCAAAAUGGGCGAAAGCCAAUUUUCACACUCAAAUAAAUUGGGUUAGUUGCACAUACAUACACA ((((.(((((((((((.........))))).((..........(((((.(((....))).)))))...((((((.....)))))).....)).)))))).)))). ( -29.90, z-score = -2.73, R) >droEre2.scaffold_4845 11485793 105 - 22589142 GUGUCUGUGUGGUUGAACGACGCCAUCAACAGCUUAGAAUUUCAAAAUGGGCGAAAGCCAAUUUUCACACUCAAAUAAAUUGGGUUAGUUGCACAUACAUACACA ((((.(((((((((((.........))))).((..........(((((.(((....))).)))))...((((((.....)))))).....)).)))))).)))). ( -29.90, z-score = -2.73, R) >droYak2.chr2R 9295510 105 + 21139217 GUGUCUGUGUGGUUGAACGACGCCAUCAACAGCUUAGAAUUUCAAAAUGGGCGAAAGCCAAUUUUCACACUCAAAUAAAUUGGGUUAGUUGCACAUACAUACACA ((((.(((((((((((.........))))).((..........(((((.(((....))).)))))...((((((.....)))))).....)).)))))).)))). ( -29.90, z-score = -2.73, R) >droSec1.super_9 671309 105 - 3197100 GUGUCUGUGUGGUUGAACGACGCCAUCAACAGCUUAGAAUUUCAAAAUGGGCGAAAGCCAAUUUUCACACUCAAAUAAAUUGGGUUAGUUGCACAUACACACACA ((((.(((((((((((.........))))).((..........(((((.(((....))).)))))...((((((.....)))))).....)).)))))).)))). ( -29.90, z-score = -2.56, R) >droSim1.chr2R 15998105 105 - 19596830 GUGUCUGUGUGGUUGAACGACGCCAUCAACAGCUUAGAAUUACAAAAUGGGCGAAAGCCAAUUUUCACACUCAAAUAAAUUGGGUUAGUUGCACAUACACACACA ((((.(((((((((((.........))))).((..........(((((.(((....))).)))))...((((((.....)))))).....)).)))))).)))). ( -29.90, z-score = -2.61, R) >droWil1.scaffold_180697 1644520 99 - 4168966 --GUCUGUAUG--UGAACGAAGCCAUCAACAGCUUAGAAUUUCAAAAUGGGUGAAAGCCAAUUUUCACACUCAAAUAAAUUGGGUUAGCCUUGUGAGUAAAUG-- --........(--((((..((((........))))..............(((....)))....)))))(((((........(((....)))..))))).....-- ( -18.20, z-score = 0.17, R) >consensus GUGUCUGUGUGGUUGAACGACGCCAUCAACAGCUUAGAAUUUCAAAAUGGGCGAAAGCCAAUUUUCACACUCAAAUAAAUUGGGUUAGUUGCACAUACAUACACA ((((.(((((((((((.........))))).((..........(((((.(((....))).)))))...((((((.....)))))).....)).)))))).)))). (-24.34 = -24.25 + -0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:49 2011