| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,331,338 – 17,331,392 |
| Length | 54 |
| Max. P | 0.912596 |
| Location | 17,331,338 – 17,331,392 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 70.59 |
| Shannon entropy | 0.53758 |
| G+C content | 0.41977 |
| Mean single sequence MFE | -14.48 |
| Consensus MFE | -6.52 |
| Energy contribution | -8.04 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.912596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17331338 54 + 21146708 GGGAAUGGCUAGGGUUUUCGCGUAUAUU-UUAUGGAUAUAUAUUGCCCUACUCAC .....((..((((((......(((((((-.....)))))))...))))))..)). ( -12.70, z-score = -1.27, R) >droAna3.scaffold_13266 5148214 52 + 19884421 ---AAUGACAAUCGGGUUGGAGUGCCUUGUCGCCAUCAAAAUUCACUCUACACCC ---..........(((((((((((..(((.......)))....))))))).)))) ( -13.00, z-score = -1.62, R) >droYak2.chr2R 9284871 53 - 21139217 GGGUAUAGUUAGGGUUUU-GUGUAUAUU-UUAUGGAUACACAUGGCUCUACACUC ......(((((((((..(-((((((...-......)))))))..)))))).))). ( -15.20, z-score = -3.31, R) >droSec1.super_9 661586 54 + 3197100 GGGGAUGGCUAGGGUUUUCGUGUAUAUU-UUAUGGAUAUAUAUGGCCCUACUCUC .((((....((((((...((((((((((-.....)))))))))))))))).)))) ( -16.40, z-score = -1.99, R) >droSim1.chr2R 15987372 54 + 19596830 GGGGAUGGCUAGGGUUUUAGUGUAUAUU-UUAUGGAUAUAUAUGGCCCUACUCUC .((((....((((((....(((((((((-.....))))))))).)))))).)))) ( -15.10, z-score = -1.38, R) >consensus GGGAAUGGCUAGGGUUUUCGUGUAUAUU_UUAUGGAUAUAUAUGGCCCUACUCUC .........(((((((...(((((((((......))))))))))))))))..... ( -6.52 = -8.04 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:48 2011