| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,301,313 – 17,301,477 |
| Length | 164 |
| Max. P | 0.583572 |
| Location | 17,301,313 – 17,301,477 |
|---|---|
| Length | 164 |
| Sequences | 7 |
| Columns | 179 |
| Reading direction | forward |
| Mean pairwise identity | 69.08 |
| Shannon entropy | 0.60114 |
| G+C content | 0.49144 |
| Mean single sequence MFE | -53.89 |
| Consensus MFE | -22.57 |
| Energy contribution | -22.00 |
| Covariance contribution | -0.57 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.583572 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17301313 164 + 21146708 CUGGCAUUCAGUUUUUGGCGGGUUGUCAAGCCAGCCA-GAGGCUGUCAUUCAUUC--GAGUUGUGGCUGUAUUGCGGUUGAGGCUGC---UCUUCUUUUAACAAUUUGGCUGGCAAGCAAG----CCAUAGGUGUGAAUAACCGCUACAGAUAAACUC-----GAAAGUUUUCGCAAAG ...((...(((((((((((.((((....)))).))))-))))))).......(((--(((((....(((((..(((((((((....)---))........(((...(((((........))----)))....)))....)))))))))))...)))))-----))).......)).... ( -59.30, z-score = -2.79, R) >droSim1.chr2R 15955238 167 + 19596830 CUGGCAUUCAGUUUUUGGCGGGUUGUCAAGCCAGCCA-GAGGCUGUCAUUCAUUC--GGGUUGUGGCUGUAUUGCGGCUGGAGCUGC---UCUUCUCUUAACAAUUUGGCUGGCAAGCAAGCCAGCCAUAG-UGUGAAUAACCGCUGCAGAUAAACUC-----GAAAGUUUUCGCCAAG .((((...(((((((((((.((((....)))).))))-))))))).......(((--(((((....(((((..((((..((((....---....))))..(((...((((((((......))))))))...-)))......)))))))))...)))))-----))).......)))).. ( -69.50, z-score = -3.81, R) >droSec1.super_9 632286 168 + 3197100 CUGGCAUUCAGUUUUUGGCGGGUUGUCAAGCCAGCCA-GGGGCUGUCAUUCAUUC--GGGUUGUGGCUGUAUUGCGGCUGGAGCUGC---UCUUCUCUUAACAAUUUAGCUGGCAAGCAAGCCAGCCAUAGGUGUGAAUAACCGCUGCAGAUAAACUC-----GAAAGUUUUCACCAAG .(((....(((((((((((.((((....)))).))))-))))))).......(((--(((((....(((((..((((((((...(((---(..((..((((....))))..))..))))..))))))...(((.......))))))))))...)))))-----)))........))).. ( -60.00, z-score = -1.56, R) >droYak2.chr2R 9253769 162 - 21139217 CUGGCAUUCAGUUUUUGGCGGGUUGUCAAGCCAGCCA-AAGGCUGUCAUUCAUUC--GGCCUGGGGUUUUGUUGCGG-UGAGGCUGCUGCUCUUCUUUUAACAAUUUGGCUGGCAAGC--------CAUAGGUGUGAAUAACCGCUGCAGAUAAACUC-----GAAAGUUUUCGUAAAG ..(((...(((((((((((.((((....)))).))))-)))))))..........--.)))..((((((..((((((-(..((((((((((................))).))).)))--------)...(((.......))))))))))..))))))-----................ ( -52.33, z-score = -0.70, R) >droEre2.scaffold_4845 11445830 159 + 22589142 CUGGCAUUCAGUUUUUGGCGGGUUGUCAAGCCAGCCA-GAGGCUGUCAUUCAUUC--GGGUUGAAGUUUUCUUGCGG-UGAGGCUGC---UCUUCUUUUAACAAUUUGGCUGGCAAGC--------CAUAGGUGUGAAUAACCGCUGCAGAUAAACUC-----GAAAGUUUUCGUACAG (((((...(((((((((((.((((....)))).))))-))))))).......(((--(((((...((((.(..((((-((((....)---))........(((...(((((....)))--------))....))).....))))).).)))).)))))-----))).......)).))) ( -51.70, z-score = -1.46, R) >dp4.chr3 15574420 151 + 19779522 CUGGCGUUAAGUUUUUGGCGACCUGUCAAGUCCCCCGUGAUGACGUCUUUCAUUCUGAGGCUGCGGCUCUCCAACACCAAACAAU------------UUGCCAGUCCGUCCGCCUGGC-------UCUUCACCGCCCGUAGGUG-UGGAGAUAGACUC-----AAAAGUUGCGGUG--- ((((((....((((((((.((.((((..((((...((.(((((......))))).)).)))))))).)).))))....))))...------------.)))))).....(((((((.(-------(((.((((.......))))-.)))).)))(((.-----...))).))))..--- ( -42.30, z-score = 0.63, R) >droWil1.scaffold_180697 1584543 170 + 4168966 GUAAAAUCUGUUGCUUGGCAGGUUG--AGACUUGUCA-GUCAUUCGCCUUUAUAU--ACGUUGCGGUU-UGCUCCUCCAGGCAUGGCCCCCCUAAAAGGACUAAGCAAGUUUUCUCGCCCGCA---CAUAGGUGUGAAUAACCGCUGGAGAUAAACUUUUGUAGGAUGUUUUGCCAAAG ((((......))))(((((((((.(--(((((....)-))).)).)))......(--(((....((((-((...((((((((.(((.((........)).))).))..((((((.((((....---....)))).))).)))..)))))).))))))..))))........)))))).. ( -42.10, z-score = 0.97, R) >consensus CUGGCAUUCAGUUUUUGGCGGGUUGUCAAGCCAGCCA_GAGGCUGUCAUUCAUUC__GGGUUGUGGCUGUAUUGCGGCUGAGGCUGC___UCUUCUUUUAACAAUUUGGCUGGCAAGC__G_____CAUAGGUGUGAAUAACCGCUGCAGAUAAACUC_____GAAAGUUUUCGCAAAG .(((....(((((((((((.((((....)))).)))).)))))))....)))........(((((((......((((......)))).....................(((....)))............(((.......))))))))))............................. (-22.57 = -22.00 + -0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:43 2011