Locus 5037

Sequence ID dm3.chr2R
Location 17,300,502 – 17,300,596
Length 94
Max. P 0.996127
window6917 window6918

overview

Window 7

Location 17,300,502 – 17,300,596
Length 94
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 75.58
Shannon entropy 0.45439
G+C content 0.49905
Mean single sequence MFE -30.58
Consensus MFE -17.09
Energy contribution -18.28
Covariance contribution 1.20
Combinations/Pair 1.05
Mean z-score -2.83
Structure conservation index 0.56
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.89
SVM RNA-class probability 0.996127
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 17300502 94 + 21146708
------AGCCACUUGCCCA--UCCGGUCCUAGGAGCUGUCCGCAUUUUAUGACCAAACAUAAAAAGCAGAAGCAGCAGCAGAAG--AACGGAGGGAUUGGAUGU
------..(((....(((.--((((.((....))((((((.((.(((((((......))))))).)).)..)))))........--..)))))))..))).... ( -28.00, z-score =  -1.63, R)
>droPer1.super_4 3688393 85 - 7162766
--------------GCUCAAGUCCAGGGCUAGGAGUUGUCCGCAUUUUAUGGACAAACAUAAAAAA-AAACACAGACAGGAGGUUUGGGGCAGGGGCGGG----
--------------((((..((((.((((........))))...(((((((......)))))))..-.....(((((.....)))))))))..))))...---- ( -26.60, z-score =  -3.27, R)
>droEre2.scaffold_4845 11445028 88 + 22589142
------AUCCACUUGCCCA--UCCGGUCCUAGGAGCUGUCCGCAUUUUAUGACCAAACAUAAAAAGCAGAUUCAGAGG--------AACGGAGGGAUUGGAUGG
------(((((....(((.--((((.((((..((...(((.((.(((((((......))))))).)).)))))..)))--------).)))))))..))))).. ( -33.00, z-score =  -3.52, R)
>droYak2.chr2R 9253043 94 - 21139217
AUCCACAACCACUUGCCCA--UCCGGUCGUAGGAGCUGUCCGCAGUUUAUGACCAAACAUAAAAAGCAGAAGCAGAAG--------AACGACGGGAUUGGAUGG
........(((....((.(--(((.(((((.....(((((.((..((((((......))))))..)).)..))))...--------.))))).)))).)).))) ( -27.70, z-score =  -2.17, R)
>droSec1.super_9 631493 94 + 3197100
------AUCCACUUGCCCA--UCCGGUCCUAGGAGCUGUCCGCAUUUUAUGACCAAACAUAAAAAGCAGAAGCAGCAGCAGAAG--AACUGAGGGAUUGGAUGG
------..........(((--(((((((((....((((((.((.(((((((......))))))).)).)..)))))..(((...--..))).)))))))))))) ( -34.00, z-score =  -3.59, R)
>droSim1.chr2R 15954428 96 + 19596830
------AUUCACUUGCCCA--UCCGGUCCUAGGAGCUGUCCGCAUUUUAUGACCAAACAUAAAAAGCAGAAGCAGCAGCAGCAGCAGAGGGAGGGAUUGGAUGG
------..........(((--(((((((((....((((((.((.(((((((......))))))).)).)..))))).((....)).......)))))))))))) ( -34.20, z-score =  -2.77, R)
>consensus
______AUCCACUUGCCCA__UCCGGUCCUAGGAGCUGUCCGCAUUUUAUGACCAAACAUAAAAAGCAGAAGCAGAAGCAG_AG__AACGGAGGGAUUGGAUGG
.....................(((((((((.(((....)))((.(((((((......))))))).)).........................)))))))))... (-17.09 = -18.28 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 17,300,502 – 17,300,596
Length 94
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 75.58
Shannon entropy 0.45439
G+C content 0.49905
Mean single sequence MFE -29.63
Consensus MFE -15.52
Energy contribution -16.68
Covariance contribution 1.17
Combinations/Pair 1.12
Mean z-score -2.50
Structure conservation index 0.52
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.11
SVM RNA-class probability 0.982548
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 17300502 94 - 21146708
ACAUCCAAUCCCUCCGUU--CUUCUGCUGCUGCUUCUGCUUUUUAUGUUUGGUCAUAAAAUGCGGACAGCUCCUAGGACCGGA--UGGGCAAGUGGCU------
....(((..(((((((.(--(((..(..((((..(((((.(((((((......))))))).)))))))))..).)))).))))--.)))....)))..------ ( -33.70, z-score =  -3.11, R)
>droPer1.super_4 3688393 85 + 7162766
----CCCGCCCCUGCCCCAAACCUCCUGUCUGUGUUU-UUUUUUAUGUUUGUCCAUAAAAUGCGGACAACUCCUAGCCCUGGACUUGAGC--------------
----..................(((.(((((((((((-.....((((......)))))))))))))))..(((.......)))...))).-------------- ( -14.40, z-score =  -0.83, R)
>droEre2.scaffold_4845 11445028 88 - 22589142
CCAUCCAAUCCCUCCGUU--------CCUCUGAAUCUGCUUUUUAUGUUUGGUCAUAAAAUGCGGACAGCUCCUAGGACCGGA--UGGGCAAGUGGAU------
..(((((..(((((((.(--------((((((..(((((.(((((((......))))))).)))))))).....)))).))))--.)))....)))))------ ( -33.70, z-score =  -3.75, R)
>droYak2.chr2R 9253043 94 + 21139217
CCAUCCAAUCCCGUCGUU--------CUUCUGCUUCUGCUUUUUAUGUUUGGUCAUAAACUGCGGACAGCUCCUACGACCGGA--UGGGCAAGUGGUUGUGGAU
((((((.((((.(((((.--------.....((((((((..((((((......))))))..))))).)))....))))).)))--).))...))))........ ( -32.10, z-score =  -2.72, R)
>droSec1.super_9 631493 94 - 3197100
CCAUCCAAUCCCUCAGUU--CUUCUGCUGCUGCUUCUGCUUUUUAUGUUUGGUCAUAAAAUGCGGACAGCUCCUAGGACCGGA--UGGGCAAGUGGAU------
..(((((..(((((.(((--((...(..((((..(((((.(((((((......))))))).)))))))))..).)))))..))--.)))....)))))------ ( -32.40, z-score =  -2.44, R)
>droSim1.chr2R 15954428 96 - 19596830
CCAUCCAAUCCCUCCCUCUGCUGCUGCUGCUGCUUCUGCUUUUUAUGUUUGGUCAUAAAAUGCGGACAGCUCCUAGGACCGGA--UGGGCAAGUGAAU------
((((((..(((........((....)).((((..(((((.(((((((......))))))).))))))))).....)))..)))--)))..........------ ( -31.50, z-score =  -2.13, R)
>consensus
CCAUCCAAUCCCUCCGUU__CU_CUGCUGCUGCUUCUGCUUUUUAUGUUUGGUCAUAAAAUGCGGACAGCUCCUAGGACCGGA__UGGGCAAGUGGAU______
....(((..(((...................((((((((.(((((((......))))))).))))).)))(((.......)))...)))....)))........ (-15.52 = -16.68 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:42 2011