| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,295,993 – 17,296,113 |
| Length | 120 |
| Max. P | 0.611419 |
| Location | 17,295,993 – 17,296,113 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.41 |
| Shannon entropy | 0.23494 |
| G+C content | 0.44705 |
| Mean single sequence MFE | -32.64 |
| Consensus MFE | -23.36 |
| Energy contribution | -26.20 |
| Covariance contribution | 2.84 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.611419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17295993 120 + 21146708 AAUAAAACAACUCCUUUGCCGUUUUACCAAGGGAAUGUCCUAACCGAGUAUCCCAUUACAGGCUAAAUGCUAGCCAAAUAGGCCACCUCCAGUGGCUCGUGCUUUGGGCGUUUAAUUCAA ....((((...(((((((.........)))))))..((((.....((((((.........(((((.....))))).....((((((.....)))))).)))))).))))))))....... ( -31.90, z-score = -1.36, R) >droEre2.scaffold_4845 11440496 115 + 22589142 AUUAAAACGACUCCUUUGCCAUUUCAGCCAUUG-----CGUUACAGAGUAUCCCAUUACAGGCUAAAUGCUGGCCAAAUAGGCCACCUCCAGUGGCUCGUGCUUUGAGCGUUUAAUUCAA ....(((((.(((....((.((...((((((((-----.........(((......))).(((.....)))((((.....)))).....)))))))).))))...))))))))....... ( -29.80, z-score = -1.48, R) >droYak2.chr2R 9248446 115 - 21139217 AUUAAAACGACUCCUUUGCCAUUUCAGCCAUUC-----CCUUACAGAGUAUCCCAUUACAGGCUAAAUGCUAGCCAAAUAGGCCACCUCCAGUGGCUCGUGCUUUGGGCGUUUAAUUCAA ....(((((.((.....((.......)).....-----.....((((((((.........(((((.....))))).....((((((.....)))))).)))))))))))))))....... ( -26.70, z-score = -1.00, R) >droSec1.super_9 627106 120 + 3197100 AUUAAAACGACUCCUUUGCUGAUUUAGCAAGGGAAUGCCGUAACAGAGUAUCACAUUACAGGCUAAAUGCUAGCCAAAUAGGCCACCUCCAGUGGCUCGUGCUUUGGGCGUUUAAUUCAA ....((((...((((((((((...))))))))))..(((....((((((((.........(((((.....))))).....((((((.....)))))).)))))))))))))))....... ( -40.40, z-score = -3.22, R) >droSim1.chr2R 15949979 107 + 19596830 AUUAAAAGAAGUCCUUUGCUGAUUUAGCAAGG-------------GAGUAUCCCAUUACCGGCUAAAUGCUAGCCAAAUAGGCCACCUCUAGUGGCUCGUGCUUUGGGCGUUUAAUUCAA .......(((.((((((((((...))))))))-------------))....((((.....(((((.....)))))..(..((((((.....))))))..)....)))).......))).. ( -34.40, z-score = -2.11, R) >consensus AUUAAAACGACUCCUUUGCCGUUUUAGCAAGGG_____CCUAACAGAGUAUCCCAUUACAGGCUAAAUGCUAGCCAAAUAGGCCACCUCCAGUGGCUCGUGCUUUGGGCGUUUAAUUCAA ....(((((...(((((((.......)))))))..........((((((((.........(((((.....))))).....((((((.....)))))).))))))))..)))))....... (-23.36 = -26.20 + 2.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:41 2011