| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,263,149 – 17,263,285 |
| Length | 136 |
| Max. P | 0.512657 |
| Location | 17,263,149 – 17,263,285 |
|---|---|
| Length | 136 |
| Sequences | 5 |
| Columns | 159 |
| Reading direction | forward |
| Mean pairwise identity | 78.65 |
| Shannon entropy | 0.35620 |
| G+C content | 0.53474 |
| Mean single sequence MFE | -48.18 |
| Consensus MFE | -33.54 |
| Energy contribution | -33.94 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.512657 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 17263149 136 + 21146708 UCGCUCGCUCUUUGGUCUUCUG-------UUUUGGGUUUUGCCAAAACGAAACGAGCCAAGCCGGCUUGUUUAAAAAA-GGGGGUUUUUGAAUCAGGGGCUUCGGAGCGGGCAGGAGGAGGAGGGGAGGGGGGCAUACAUGGGU--------------- ..((((.((((((..(((((((-------((((((......)))))))(...((..(((((((..((((((((((((.-.....)))))))).))))))))).))..))..)....))))))..))))))))))..........--------------- ( -47.10, z-score = -1.22, R) >droSim1.chr2R 15916322 135 + 19596830 UCGCUCGCUCUUUGGUCUUCUG-------UUUUGGGUUUUGCCAAAACGAAACGAGCCAAGCCGGCUUGUUUAAAAAA-GGGGGUUUUUGAAACGGGGGCUUUGAAGCGGGCGGGGGGCAG-GAGGAGGGGCGCAUACAUGGGU--------------- (((((((((.(..(((((.(((-------(((..((..((.((......(((((((((.....)))))))))......-)).))..))..)))))))))))..).))))))))).(.((..-........)).)..........--------------- ( -48.10, z-score = -1.32, R) >droSec1.super_9 594559 133 + 3197100 UCGCUCGUUCUUUGGUCUUCUG-------UUUUGGGUUUUGCCAAAACGAAACGAGCCAAGCCGGCUUGUUUAAAAAA-GGGGGUUUUUGAAUC-GGGGCUUUGAAGCGGG-AGGGGGCAG-AAGGGGGGAGGGAAACAUGGGU--------------- ((.(((.((((.(..(((((((-------(((..((....(((....(((.(((((((.....)))))))(((((((.-.....))))))).))-).)))))..)))))))-)))..).))-)).))).)).(....)......--------------- ( -43.20, z-score = -0.95, R) >droYak2.chr2R 9215089 159 - 21139217 UCGUUCGCUCUUUGGUCUUCUGUUUUCGGUUUUGGGUUUUGCCAAAACGAAACGAGCCAAGCCGGCUUGUUUAAAAAAAGGGGGUUUCUGAAUCGGGUGCUUUAAAGCGAGCGGGGUGCAGGGGGUGGGGGGACGGGGACGGGUGGGCAAACAUUGGGU ..(((.((((.((.((((.(((((..(.(((((((......))))))).(((((((((.....)))))))))..........(.(..(((..(((..((((....))))..)))....)))..).)..)..))))))))).)).)))).)))....... ( -55.20, z-score = -1.61, R) >droEre2.scaffold_4845 11407493 138 + 22589142 UCGUUCGCUCUUUGGUCUUCUG-------UUUUGGGUUUUGCCAAAACGAAACGAGCCAAGCCGGCUUGUUUAAAAAAAGGGGGUUUUUGAAUCGGGGGCUUUGAAGCGAGCGGGGGGCAGGGG-UGCUG-------------UGGGCAAACAUUGGGU (((((((((.(..(((((((((-------((((((......))))))))(((((((((.....)))))))))......................)))))))..).)))))))))....((((..-(((..-------------...)))..).)))... ( -47.30, z-score = -1.17, R) >consensus UCGCUCGCUCUUUGGUCUUCUG_______UUUUGGGUUUUGCCAAAACGAAACGAGCCAAGCCGGCUUGUUUAAAAAA_GGGGGUUUUUGAAUCGGGGGCUUUGAAGCGGGCGGGGGGCAG_GGGGGGGGGGGCAUACAUGGGU_______________ (((((((((.(..(((((((.........((((((......))))))..(((((((((.....)))))))))......................)))))))..).)))))))))............................................. (-33.54 = -33.94 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:40 2011