| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,221,461 – 17,221,595 |
| Length | 134 |
| Max. P | 0.629409 |
| Location | 17,221,461 – 17,221,595 |
|---|---|
| Length | 134 |
| Sequences | 12 |
| Columns | 140 |
| Reading direction | forward |
| Mean pairwise identity | 68.57 |
| Shannon entropy | 0.66295 |
| G+C content | 0.44335 |
| Mean single sequence MFE | -30.26 |
| Consensus MFE | -13.42 |
| Energy contribution | -12.63 |
| Covariance contribution | -0.79 |
| Combinations/Pair | 1.35 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.629409 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17221461 134 + 21146708 UGAAACCCUGCA-UUUAAAGAGAUUCCGGCUAAGCGAGUGUGGCACAGAGAAA--AUCUUCCUUUGGAAAGU--AGACUUUCAGACAUAGUUGAGGCGACAU-AACCCACGCCACGAUUGUAUCACUCAAAGUCUAAUAU (((((..((((.-((((((((((((((.((((........))))...).))..--))))..)))))))..))--))..)))))((.(((((((.((((....-......)))).))))))).))................ ( -28.30, z-score = -0.17, R) >droSim1.chr2R 15873675 134 + 19596830 UGAAACCUUGCA-UUUAAAGCGAUUCCGGUCAAGCGAGUGUGGCACAGAAAAA--AUCUUCCUUUGGAAAAU--AGACCUUCAGACAUAGUUGAGGCGAAAU-AACCCACGCCACGAUUGUAUCACUCAAAGUCUAAUAU ((((...((((.-......))))....((((..((.......)).........--...((((...))))...--.))))))))((.(((((((.((((....-......)))).))))))).))................ ( -25.40, z-score = 0.21, R) >droSec1.super_9 552844 134 + 3197100 UGAAACCUUGCA-UUUAAAGCGAUUCCGGUCAAGCGAGUGUGGCACAGAGAAA--AUCUUCCUUUGGAAAAU--AGACCUUCAGACAUAGUUGAGGCGACAU-AACCUACGCCACGAUUGUAUCACUCAAAGUCUAAUAU ((((...((((.-......))))....((((..((.......)).(((((...--......)))))......--.))))))))((.(((((((.((((....-......)))).))))))).))................ ( -27.10, z-score = 0.10, R) >droYak2.chr2R 9172306 135 - 21139217 UGAAAUCUUGCAAUUUGAAGCUAUUC-GGUCAAGCGAGUGCGGCACAGAAAAA--AUCUUCCUUUGGAAAGU--AAACUUUCAGACAUAGUCGAGGCGACCUUAAUCAACGCCACGAUUGUAUCACUCAAAGUCUAAUAU .....((((((........((.((((-(......))))))).))).)))....--......((((((((((.--...))))).((.(((((((.((((...........)))).))))))).))...)))))........ ( -32.00, z-score = -1.40, R) >droEre2.scaffold_4845 11365268 136 + 22589142 UGAAACCUUGCAGUUUAAAGCUAUUCCGGUCAAGCUAGUUCGGCACAGAAAAAU-AUCUUCCUUUGGAAAGU--AGACCUUCAGACAUAGUCGAGGUGACCU-AAUCCACGCCACGAUUGUAUCACUCAAAGUCUAAUAU ....((.(((.(((.............((((..(((.....))).........(-(..((((...))))..)--)))))....((.(((((((.((((....-......)))).))))))).)))))))).))....... ( -26.80, z-score = -0.07, R) >droAna3.scaffold_13266 5024035 116 + 19884421 UGAAACUUCGU---UCCAUGCUGUUU-CAAAGAGCGAGCGUUGCC----------------GAGAU-UGAAC--AGACCUUCAGACAUAGUUGAGGCGAAUUAACC-CACGCCACGAUUGUAUCACUCAUUGUCUAACAU ...((((((((---((..((......-))..))))))).)))...----------------(((..-((((.--.....))))((.(((((((.((((........-..)))).))))))).)).)))............ ( -25.30, z-score = -0.40, R) >dp4.chr3 9987603 131 - 19779522 -UGAAUACCGUAUCUCGAUGCGCAUUCGAUUCAGCGAGCACUGCCGAGAGAAA---CUUCCCUUCGGGGAGU--AUACGUUCAGACAUAGUCGAAGCGACU--AACCCACGCU-CGAUUAUAUCACUCAACGUCUAACAU -...((((.((.((((..((.(((((((......))))...))))).)))).)---).((((....))))))--))(((((..((.((((((((.(((...--......))))-))))))).))....)))))....... ( -35.70, z-score = -1.71, R) >droPer1.super_4 2055410 131 - 7162766 -UGAAUACCGUAUCUCGAUGCGCAUUCGAUUCAGCGAGCACUGCCGAGAGAAA---CUUCCCUUCGGGGAGU--AUACGUUCAGACAUAGUCGAAGCGACU--AACCCACGCU-CGAUUAUAUCACUCAACGUCUAACAU -...((((.((.((((..((.(((((((......))))...))))).)))).)---).((((....))))))--))(((((..((.((((((((.(((...--......))))-))))))).))....)))))....... ( -35.70, z-score = -1.71, R) >droWil1.scaffold_180697 1476267 136 + 4168966 -CGAAUUGAGU-UCUAAUUACUCUUUCGAUUUAGCAAGCAGGGCCAAGAGAAAAAUUCUCCUUUCGGGGAAUUCAGAAGUUCAGACAUAGUUGAAGCGAUUU-AACCCACGCU-CGAUUAUAUCACUCAGCUUCCGACAU -((((..((((-.......)))).)))).....(.((((.(((....(((...((((((((....))))))))......))).((.((((((((.(((....-......))))-))))))).)).))).)))).)..... ( -31.90, z-score = -1.07, R) >droVir3.scaffold_12875 2553018 126 - 20611582 -AGGGUCUUCC---UAGUGGCCCUUU-AAGCUAGCGCGCGCUGCCCAGAGAAA----CUUCAACAC-GAAGC--AGACGUUCAGACAUAGUCGAAGCGAUCAUAAUCCACGCU-CGAUUAUAUCACUCAACGUCUGACA- -((((((....---....))))))..-..((.(((....))))).........----((((.....-))))(--(((((((..((.((((((((.(((...........))))-))))))).))....))))))))...- ( -38.30, z-score = -2.45, R) >droMoj3.scaffold_6496 15187232 126 - 26866924 -AGAAGCUUGU---UAGUUGCCCUUU-GAGCUAGCCAACGCUGCCCCGAGAAA----CUUCAAUAU-GAAGC--AGACGUUCAGACAUAGUCGAAGCGAUUCCAUUUCACGCC-CGAUUAUAUCACUCAACGUCGGACA- -...(((((((---(((((.......-.)))))).))).)))...((......----((((.....-)))).--.((((((..((.(((((((..(((...........))).-))))))).))....))))))))...- ( -29.00, z-score = -1.02, R) >droGri2.scaffold_15245 14138096 127 - 18325388 -UGAGCUCCCC---CAGUGAUCUUUU-AAUCAAGCGUGCGCUGCCCAGAUAAA----CUUCAACUUCGAAGU--AGACGUUCAGACAUAGUCGAAUCGAUUCAACC-CACGCU-CGAUUAUAUCACUCAACGUCUGACAU -..........---.((((((....(-((((.((((((.(.((....(((..(----((((......)))))--.(((...........)))..)))....)).).-))))))-.))))).))))))............. ( -27.60, z-score = -1.42, R) >consensus _GAAACCUUGCA_UUUGAAGCGAUUUCGAUCAAGCGAGCGCGGCCCAGAGAAA___UCUUCCUUUGGGAAGU__AGACGUUCAGACAUAGUCGAAGCGACUU_AACCCACGCC_CGAUUAUAUCACUCAACGUCUAACAU .................................((.......))................................(((((..((.(((((((.((((...........)))).))))))).))....)))))....... (-13.42 = -12.63 + -0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:34 2011