| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,185,496 – 17,185,569 |
| Length | 73 |
| Max. P | 0.974533 |
| Location | 17,185,496 – 17,185,569 |
|---|---|
| Length | 73 |
| Sequences | 9 |
| Columns | 81 |
| Reading direction | forward |
| Mean pairwise identity | 68.76 |
| Shannon entropy | 0.63853 |
| G+C content | 0.53986 |
| Mean single sequence MFE | -18.12 |
| Consensus MFE | -11.50 |
| Energy contribution | -11.14 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.974533 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17185496 73 + 21146708 ------GGUUUUGCUUCCAAUUCCAUUCAGUUUUCCAGCAGAGCGCGCCGCGUGCGCUCCUCUAAUCG--UAAUCGCUGUG ------((..(((....)))..))...........((((.((((((((...))))))))........(--....))))).. ( -19.80, z-score = -2.00, R) >droSim1.chr2R 15837706 79 + 19596830 GAUUUUGCCUCCAAUUCCAAUUCCAUUUAGUUUUCCAGCAGAGCGCGCCGCGUGCGCUCCUCUAAUCG--UAAUCGCUGUG ...................................((((.((((((((...))))))))........(--....))))).. ( -16.70, z-score = -1.45, R) >droSec1.super_9 515305 79 + 3197100 GAUUUUGCCUCCAAUUCCAAUUCCAUUUAGUUUUCCAGCAGAGCGCGCCGCGUGCGCUCCUCUAAUCG--UAAUCGCUGUG ...................................((((.((((((((...))))))))........(--....))))).. ( -16.70, z-score = -1.45, R) >droYak2.chr2R 9136431 79 - 21139217 GGUUUCGCUUCCAAUUCCAAUUCCAUUUAGUUUUCCAGCAGAGCGCGCCGCGUGCGCUCCUCUAAUCG--UAAUCGUUGUG ((((.((......................((......)).((((((((...)))))))).......))--.))))...... ( -15.20, z-score = -0.69, R) >droEre2.scaffold_4845 11329394 79 + 22589142 GGUUUCGCUGCCAAUUCCAAUUCCAUUUAGUUUUCCAGCAGAGCGCGCCGCGUGCGCUUCUCUAAUCG--UAAUCGGUGUG .(((..((((.........................))))..)))((((((..((((.((....)).))--))..)))))). ( -17.01, z-score = 0.07, R) >droAna3.scaffold_13266 4985176 70 + 19884421 ------GGUUCUAUUUCCACUUCCAAUUCGAAUUC----AGAGCGCGCCGUGUGCGCUCCACUAAUCGC-UGACCAUAUUG ------((((..........(((......)))...----.((((((((...))))))))..........-.))))...... ( -15.60, z-score = -1.64, R) >dp4.chr3 3654558 63 + 19779522 ------------------GGUUACAGUUAGUUUUCCAGCAGAGUGCGCCGCGUGCGCUCCACUCACCGACUAAUCGCCGCU ------------------(((....(((((((....((..((((((((...))))))))..))....))))))).)))... ( -19.40, z-score = -1.55, R) >droPer1.super_2 3844397 63 + 9036312 ------------------GGUUACAGUUAGUUUUCCAGCAGAGUGCGCCGCGUGCGCUCCACUCACCGACUAAUCGCCGCU ------------------(((....(((((((....((..((((((((...))))))))..))....))))))).)))... ( -19.40, z-score = -1.55, R) >droMoj3.scaffold_6496 14139122 67 - 26866924 ------------GGCAUUGCCUGCGGUUAGUUUUCCAGCAGUGCGCGUUGCGUGUGCUCGACAGCUCGAAUA--CGGCGCG ------------.(((((((.((.((.......)))))))))))((((..(((((..((((....)))))))--)))))). ( -23.30, z-score = 0.43, R) >consensus ______GCUUCCAAUUCCAAUUCCAUUUAGUUUUCCAGCAGAGCGCGCCGCGUGCGCUCCUCUAAUCG__UAAUCGCUGUG ........................................((((((((...))))))))...................... (-11.50 = -11.14 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:28 2011