| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,170,182 – 17,170,276 |
| Length | 94 |
| Max. P | 0.679712 |
| Location | 17,170,182 – 17,170,276 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 82.54 |
| Shannon entropy | 0.33717 |
| G+C content | 0.43578 |
| Mean single sequence MFE | -21.92 |
| Consensus MFE | -14.61 |
| Energy contribution | -15.03 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.679712 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17170182 94 + 21146708 --CGGCAAAACACUAUCUAAGUUGAAUAUUUUUCGCCAACGCAGCAGAAUAGUAAAGCCAGCGGAAACGCAUUUCGUUUUACGACUGCGAUACGAA --.(((.....(((.....))).(((.....))))))..(((((.......(((((((..(((....))).....)))))))..)))))....... ( -23.80, z-score = -1.93, R) >droSim1.chr2R 15821631 94 + 19596830 --GCACAAAACACUAUCUAAGUUGAACAUUUUUCGCCAACGCAGCAGAAUAGUAAAGCCAGCGGAAACGCAUUUCGUUUUACGACUGCGAUACGAA --...........((((...((((............))))...((((....(((((((..(((....))).....)))))))..)))))))).... ( -21.60, z-score = -1.80, R) >droSec1.super_9 500031 94 + 3197100 --CCACAAAACACUAUCUAAGUUGAACAUUUUUCGCCAACGCAGCAGAAUAGUAAAGCCAGCGGAAACGCAUUUCGUUUUACGACUGCGAUACGAA --...........((((...((((............))))...((((....(((((((..(((....))).....)))))))..)))))))).... ( -21.60, z-score = -2.28, R) >droYak2.chr2R 9121015 94 - 21139217 --CAAAAAAACACUAGCUAAGUUGGACAGUUUUCGCCAACGCAGCAGAAUAGCAAAGCCAGCGGAAACGCAUUUCGUUUGACGACUGCGAUACGAA --..........((.(((..(((((...(....).)))))..)))))....(((......(((....)))...(((.....))).)))........ ( -22.40, z-score = -0.90, R) >droEre2.scaffold_4845 11314161 94 + 22589142 --CCAAAGCACACUAUAUAAGUUGGGCAUUUUUCGCCAACGCAGCAGAAUAGAAAAGCUAGCGGAAACGCAUUUUGCUUUACGACUGCGAUACGAA --...........(((...((((((((.......))).....((((((((((.....)))(((....))).)))))))...)))))...))).... ( -22.80, z-score = -1.43, R) >droAna3.scaffold_13266 4969588 90 + 19884421 GAGGAAAACGCUUCUAUCAAAGUGGGAAAAUUUCGCCAACACAGCAGAAUAG-AGACCGAGCGGAAACGCAAU-----UUAUAACUGCGAUACGGA ((((......))))((((....(((((.....)).))).....((((.((((-(......(((....)))..)-----))))..)))))))).... ( -19.30, z-score = -1.44, R) >consensus __CCAAAAAACACUAUCUAAGUUGAACAUUUUUCGCCAACGCAGCAGAAUAGUAAAGCCAGCGGAAACGCAUUUCGUUUUACGACUGCGAUACGAA ...............................((((....(((((................(((....)))...(((.....))))))))...)))) (-14.61 = -15.03 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:28 2011